Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ASUIS_RS04995 Genome accession   NZ_CP032100
Coordinates   959094..960944 (-) Length   616 a.a.
NCBI ID   WP_118885973.1    Uniprot ID   A0AAD0SQ50
Organism   Arcobacter suis CECT 7833     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954094..965944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUIS_RS04960 (ASUIS_0929) - 954104..954745 (-) 642 WP_118885967.1 adenylate kinase -
  ASUIS_RS04965 (ASUIS_0930) - 954876..955445 (+) 570 WP_118885968.1 adenylate kinase -
  ASUIS_RS04970 (ASUIS_0931) - 955449..956219 (+) 771 WP_407923310.1 competence/damage-inducible protein A -
  ASUIS_RS04975 (ASUIS_0932) - 956285..957424 (+) 1140 WP_118885970.1 DUF817 family protein -
  ASUIS_RS04980 (ASUIS_0933) - 957432..957788 (-) 357 WP_118885971.1 VanZ family protein -
  ASUIS_RS04985 (ASUIS_0934) - 957865..958029 (-) 165 WP_204513380.1 nucleotidyltransferase family protein -
  ASUIS_RS04990 (ASUIS_0935) - 958069..959091 (-) 1023 WP_118885972.1 alanine racemase -
  ASUIS_RS04995 (ASUIS_0936) uvrC 959094..960944 (-) 1851 WP_118885973.1 excinuclease ABC subunit UvrC Machinery gene
  ASUIS_RS05000 (ASUIS_0937) - 961069..961707 (+) 639 WP_118885974.1 GNAT family N-acetyltransferase -
  ASUIS_RS05005 (ASUIS_0938) - 962047..963138 (+) 1092 WP_118885975.1 response regulator -
  ASUIS_RS05010 (ASUIS_0939) - 963132..963875 (-) 744 WP_118885976.1 choline/ethanolamine kinase family protein -
  ASUIS_RS05015 (ASUIS_0940) pnuC 963865..964422 (-) 558 WP_235659495.1 nicotinamide riboside transporter PnuC -
  ASUIS_RS05020 (ASUIS_0941) - 964490..964969 (-) 480 WP_118887642.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 71808.18 Da        Isoelectric Point: 9.1307

>NTDB_id=313750 ASUIS_RS04995 WP_118885973.1 959094..960944(-) (uvrC) [Arcobacter suis CECT 7833]
MNLQDKLKQLPFDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLGPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYGEDFPRLEITRKIHKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
VKGKTACLFHQIKKCFAPCENKISKEEYTKIVENALEYIYNKTKLISKLNERMLQYSNDFRFEDAMMIRDRIKTIEKSQI
KSGIDLTTNEDIDIFTITASNKKAVVVRMFIRDGKIASSSHDFLKVDNFDEEFEFDFEEAYKRAIINYYDNEIPLLPKEI
LVGIELEDTAELEEFLQVRFNKKIKIINPKKDKKKDIVQIALSNCDELLRIDSSKNQTNIYEELKDLFTLQTLPFRIESF
DNSHMMGQATVGAMIVWNEELNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVL
SVGVNLDIIAVAKEKVDAKAHRAKGAAKDIIHYKTKSGEFKNLKLSTSDKRLQFVQRQRDEAHRFVINFHKKQKRAEDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASVEELKNVLNEKDAIIISNYFITPKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=313750 ASUIS_RS04995 WP_118885973.1 959094..960944(-) (uvrC) [Arcobacter suis CECT 7833]
ATGAATCTACAAGACAAACTCAAACAACTTCCCTTTGATGCTGGTGTTTATCAATATTTCGATAAAAACGGTCATTTACT
CTATATTGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCATATTTTAAATTTACTCCAAAACTATTACCTGCTGATA
AGTTAGGACCACGAATTTACAAAATGATTAGTGAAGTTGAGTCTTGCGAATGGATAGTTGTTCCAAATGAACATGATGCT
TTGATTTTGGAAAACTCTTTAATCAAACAATTAAAACCAAAATACAATATTTTACTTCGTGATGATAAAACCTATCCATA
TATTGTAATTGATTATGGAGAAGATTTCCCAAGACTTGAAATCACAAGAAAAATCCATAAGGGCAAAAATATCAAATACT
TTGGACCATATTCAAGTGGTGCAAAAGATATGCTTGATTCTATTTATGAAATAGTTCCGTTGGTGCAAAAAAAATCTTGT
GTTAAAGGTAAAACTGCTTGTTTGTTCCATCAAATAAAAAAATGTTTTGCCCCATGTGAAAATAAAATTTCAAAAGAAGA
ATACACAAAAATAGTAGAAAATGCCCTAGAATACATCTACAATAAAACAAAACTAATCTCAAAACTAAATGAAAGAATGC
TTCAATACTCAAACGATTTTAGATTTGAAGATGCCATGATGATAAGAGATAGAATAAAAACAATCGAAAAATCTCAAATA
AAATCAGGAATAGATTTAACAACAAATGAAGATATAGATATTTTTACAATCACAGCCTCAAATAAAAAAGCAGTAGTTGT
GCGAATGTTTATAAGAGATGGGAAAATAGCCTCTTCAAGCCATGATTTTTTAAAGGTTGATAATTTTGATGAAGAGTTTG
AATTTGATTTCGAAGAAGCTTATAAAAGAGCAATTATCAACTACTATGACAATGAAATTCCACTTTTACCAAAAGAGATT
TTAGTAGGAATTGAACTTGAAGATACAGCTGAACTTGAAGAGTTTTTACAAGTAAGATTTAATAAAAAAATCAAAATTAT
AAATCCTAAAAAAGATAAGAAAAAAGATATTGTTCAAATTGCTTTAAGTAATTGTGATGAACTTTTACGAATTGATTCAA
GTAAAAATCAAACAAATATTTATGAAGAATTAAAAGATTTATTTACACTTCAAACTCTTCCCTTTAGAATCGAAAGCTTC
GATAACTCTCATATGATGGGACAAGCAACCGTTGGAGCTATGATTGTATGGAATGAAGAGTTAAACTCATTTGATAAAAA
AGCTTTTAGACACTATAACCTTGAATCAAAAGATGAATATTCTCAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCAGCTCCTGATTTATGGATAATTGATGGTGGAGAGACACTTTTGAAATTAGCCTATGATATTGTGTTA
TCAGTTGGAGTAAATCTTGATATAATTGCAGTTGCAAAAGAGAAAGTTGATGCAAAAGCCCACAGAGCAAAAGGTGCAGC
AAAAGATATAATTCACTACAAAACAAAAAGTGGTGAATTTAAAAATCTAAAATTATCAACAAGTGATAAAAGACTTCAAT
TTGTGCAAAGACAGCGTGATGAAGCCCATAGATTTGTAATCAATTTTCATAAAAAACAAAAAAGAGCAGAAGATAAACAA
ATATCGTTACTGCAAATAAAAGGAATAGGAGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGTGAGTTTGAAAAAAT
CAAAAATGCATCTGTTGAAGAATTAAAAAATGTTTTAAATGAAAAAGATGCAATTATCATATCAAATTATTTTATTACCC
CAAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(386-547)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.078

97.89

0.5

Multiple sequence alignment