Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ASKIR_RS03405 Genome accession   NZ_CP032099
Coordinates   631142..633004 (-) Length   620 a.a.
NCBI ID   WP_115588476.1    Uniprot ID   -
Organism   Aliarcobacter skirrowii CCUG 10374     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626142..638004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASKIR_RS03390 (ASKIR_0680) - 626401..627561 (-) 1161 WP_115588474.1 MalY/PatB family protein -
  ASKIR_RS03395 (ASKIR_0681) - 627784..630060 (-) 2277 WP_066356385.1 methyl-accepting chemotaxis protein -
  ASKIR_RS03400 (ASKIR_0682) - 630139..631170 (-) 1032 WP_115588475.1 alanine racemase -
  ASKIR_RS03405 (ASKIR_0683) uvrC 631142..633004 (-) 1863 WP_115588476.1 excinuclease ABC subunit UvrC Machinery gene
  ASKIR_RS10380 (ASKIR_0684) - 633040..634707 (-) 1668 WP_115588477.1 efflux RND transporter permease subunit -
  ASKIR_RS10385 (ASKIR_0685) - 634704..636263 (-) 1560 WP_115588478.1 efflux RND transporter permease subunit -
  ASKIR_RS03420 (ASKIR_0686) - 636256..636978 (-) 723 WP_115588479.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 71890.03 Da        Isoelectric Point: 9.5107

>NTDB_id=313742 ASKIR_RS03405 WP_115588476.1 631142..633004(-) (uvrC) [Aliarcobacter skirrowii CCUG 10374]
MNLEEKLKQLPNEAGVYQYFDNQGHLLYIGKAKSLKNRVKSYFKFSPTLQASSDLSPRIYKMISETSSLEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIFVNLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
VKGKKACLFFQIGKCLAPCEDKISKEDYKKILDEALSYIYNKSKILTKLKEKMLFYSQNFRFEEALVLRDRIKTIEKSQI
KTGIDLTSNDDLDIFAIKSSNKKAVIVRMFIRDGKLASSNYDFMKSNDDVEFDIQEAYKRAIINYYSNDLPIIPKEILVA
NEIEELDSIEDFLYQKFSKKIKIVNPKIDKKATIVKIALNNCDELLRLESIKQQNSIYSEIKELFSLKNSPNIIESFDNS
HLMGQARVGAMVVWNSQIESFDKKSYRHYNLESLDEYSQMRELLLRRVESFDKNSPPDLWLIDGGSTLLNLAFEIVSSIG
VNLDIIAISKQKVDAKAYRAKGNAKDILHFIQNKEIKSINLLPSDKRLQFVQRLRDEAHRFAISFHKKQKRKEDKDISFL
QIKGIGEAKIKKLLLYFGEFEKIKNATFDELKTVLNQSDAQNIVDYFKKDKSGEDINKQG

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=313742 ASKIR_RS03405 WP_115588476.1 631142..633004(-) (uvrC) [Aliarcobacter skirrowii CCUG 10374]
ATGAATTTAGAAGAGAAATTAAAGCAACTCCCAAATGAAGCTGGAGTTTATCAATATTTTGATAATCAAGGGCATCTATT
ATATATAGGAAAAGCAAAAAGCTTAAAAAATAGAGTAAAAAGCTACTTTAAATTTAGCCCTACTTTGCAAGCTTCAAGCG
ATTTAAGTCCACGAATTTATAAGATGATTAGTGAAACATCCTCTTTAGAGTGGATTGTTGTACCAAATGAGCACGATGCT
TTAATTTTAGAAAACTCCTTAATAAAACAGCTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACATATCCATA
TATTTTTGTAAATTTAAATGAGGATTTTCCACGACTTGAGATAACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATATTCAAGTGGTGCAAAAGATATGCTTGATAGTATCTATGAGATAGTTCCACTGGTGCAAAAAAAATCTTGT
GTAAAGGGTAAAAAAGCTTGTCTATTTTTTCAAATAGGTAAATGTTTAGCTCCATGTGAAGATAAAATCTCTAAAGAGGA
TTATAAAAAGATTTTAGATGAGGCTTTAAGTTATATCTACAATAAATCAAAAATCTTGACAAAACTAAAAGAGAAAATGC
TTTTTTATTCACAAAACTTTAGATTTGAAGAGGCACTTGTATTAAGAGATAGAATAAAAACTATTGAAAAATCGCAAATT
AAAACAGGAATTGATTTAACATCAAATGATGATTTGGATATTTTTGCAATAAAATCTAGCAACAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAATTAGCATCTTCAAACTATGATTTTATGAAATCAAATGATGATGTTGAGTTTGATA
TACAAGAGGCTTATAAAAGAGCTATTATAAACTACTACTCAAATGATTTGCCAATAATTCCAAAAGAGATACTTGTAGCA
AATGAGATTGAAGAGCTTGACTCTATAGAGGATTTTTTATATCAAAAATTTAGTAAAAAGATAAAAATAGTAAATCCAAA
AATAGATAAAAAAGCTACTATTGTAAAAATTGCTTTAAATAACTGTGATGAGCTTTTAAGATTGGAGAGTATTAAACAGC
AAAACTCTATTTATAGTGAAATAAAAGAGCTATTCTCTTTAAAAAATAGTCCAAACATAATAGAGAGTTTTGATAACTCT
CATTTAATGGGACAAGCAAGAGTTGGAGCTATGGTTGTTTGGAATAGCCAAATAGAGAGTTTTGATAAAAAATCATATAG
ACACTACAATCTTGAATCACTTGATGAATACTCACAAATGAGAGAACTTCTTCTTAGAAGAGTTGAGAGTTTTGATAAAA
ACTCTCCTCCTGATTTATGGCTTATTGATGGTGGTTCAACTTTGCTAAATTTAGCTTTTGAGATAGTTTCTTCTATTGGG
GTAAATTTAGATATTATTGCCATTTCAAAACAAAAAGTAGATGCAAAAGCTTATAGAGCAAAGGGAAATGCAAAAGATAT
ACTACACTTTATTCAAAATAAAGAGATAAAAAGTATAAATCTTCTTCCAAGTGATAAAAGATTGCAATTTGTTCAAAGAT
TAAGAGATGAAGCTCATAGATTTGCTATTAGTTTTCATAAAAAACAGAAAAGAAAAGAGGACAAAGATATCTCTTTTCTT
CAAATAAAGGGTATTGGTGAAGCAAAAATCAAAAAACTACTTCTTTATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAC
ATTTGATGAGTTAAAAACTGTTTTAAATCAAAGTGATGCACAAAATATAGTTGATTATTTTAAAAAGGATAAAAGTGGCG
AAGATATTAATAAACAAGGATAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-543)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.333

96.774

0.497

Multiple sequence alignment