Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AMOL_RS04355 Genome accession   NZ_CP032098
Coordinates   864219..866048 (-) Length   609 a.a.
NCBI ID   WP_099342194.1    Uniprot ID   -
Organism   Malaciobacter molluscorum LMG 25693 strain CECT 7696     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859219..871048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMOL_RS04330 (AMOL_0864) - 859364..861121 (+) 1758 WP_099342189.1 YgiQ family radical SAM protein -
  AMOL_RS04335 (AMOL_0865) - 861196..861765 (+) 570 WP_099342190.1 adenylate kinase -
  AMOL_RS04340 (AMOL_0866) - 861770..862525 (+) 756 WP_099342191.1 molybdopterin-binding protein -
  AMOL_RS04345 (AMOL_0867) - 862527..863195 (-) 669 WP_099342192.1 tetratricopeptide repeat protein -
  AMOL_RS04350 (AMOL_0868) - 863192..864214 (-) 1023 WP_099342193.1 alanine racemase -
  AMOL_RS04355 (AMOL_0869) uvrC 864219..866048 (-) 1830 WP_099342194.1 excinuclease ABC subunit UvrC Machinery gene
  AMOL_RS04360 (AMOL_0870) - 866058..866522 (-) 465 WP_099342195.1 DUF2059 domain-containing protein -
  AMOL_RS04365 (AMOL_0871) - 866627..868234 (+) 1608 WP_099342196.1 hypothetical protein -
  AMOL_RS04370 (AMOL_0872) - 868257..869153 (-) 897 WP_099342197.1 hypothetical protein -
  AMOL_RS04375 (AMOL_0873) - 869275..870564 (-) 1290 WP_099342198.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 71543.15 Da        Isoelectric Point: 9.1783

>NTDB_id=313733 AMOL_RS04355 WP_099342194.1 864219..866048(-) (uvrC) [Malaciobacter molluscorum LMG 25693 strain CECT 7696]
MNLEEKLKELPKDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFIPTLGPADKLSPRIYKMITEVKSLEWIVVPSEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIIIDYKEDFPRLEITRKVLKDKNIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKAKEACLFHQIKKCYAPCVGKITKEEYSKIVDEALEYIYNKNKLLRKLNERMMQYSEEFRFEDAMKIRDRIKTIEKSQI
HTGMDLATHENIDLFAIEVSKEKAVLVRMFFREGKLASSNHDYLKINQKELDIDLNEAYKRAIINYYDNEIPLLPKEIIV
AHELEEIEDLEEFLKDRFEKNIPIVYPKRGKKTKIVEVALNNCKELLRLQNVNTSNIYEELKELFHFANIPTRFECYDNS
HMMGQATVGGMITWEEKFLKKDYRHYNLEAKDEYSQMKETLMRRVDSFEKNPAPDVWVIDGGATLLNLAIDIRNSVGVNL
DIIAIAKEKLDFKAHRAKGSAKDIIYFEKDNTIQRVDLLPSDKRLQFVQRLRDEAHRFAISFHKKQKRKEDSKISLLQIK
GIGEAKVKKLLLYFGEFEKIKTASIEDLKAVLNEKDAKVLFNYFKEIKE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=313733 AMOL_RS04355 WP_099342194.1 864219..866048(-) (uvrC) [Malaciobacter molluscorum LMG 25693 strain CECT 7696]
ATGAACTTAGAAGAGAAATTAAAAGAGCTACCTAAAGATGCAGGTGTCTATCAGTACTTTGATAAAGATGGGCACCTTCT
TTATGTAGGAAAAGCAAAAGTATTAAAAAATAGAGTAAAATCATATTTTAAATTTATACCTACTTTAGGACCTGCTGATA
AATTAAGCCCTAGAATATATAAGATGATAACAGAAGTTAAATCTTTAGAATGGATTGTTGTTCCAAGTGAACATGATGCT
TTAATACTTGAAAATTCACTTATAAAACAACTTAAACCCAAATATAATATTTTATTAAGAGATGATAAAACATACCCTTA
CATTATAATTGATTATAAAGAAGATTTTCCAAGATTAGAGATTACAAGAAAAGTTTTAAAAGATAAAAATATTAAATATT
TTGGTCCATATTCAACAGGAGCAAGAGATATGCTTGATAGTATATATGAAATTGTTCCTTTGGTTCAAAAAAAATCATGT
GTAAAAGCTAAAGAAGCATGCCTATTTCATCAAATAAAAAAATGTTATGCACCATGTGTTGGAAAAATCACAAAAGAAGA
ATATAGTAAAATAGTTGATGAAGCTTTAGAATATATTTATAATAAAAATAAATTATTAAGAAAATTAAATGAAAGAATGA
TGCAATATTCTGAAGAATTTAGATTTGAAGATGCAATGAAAATCAGAGATAGAATAAAAACAATTGAAAAATCTCAAATT
CACACAGGAATGGATCTTGCTACACATGAAAATATAGATCTTTTTGCAATAGAAGTTTCTAAAGAAAAAGCAGTCTTAGT
TAGAATGTTTTTTAGAGAAGGAAAATTAGCTTCAAGTAACCATGATTATTTAAAAATAAATCAAAAAGAACTTGATATTG
ATTTAAATGAAGCCTATAAAAGAGCAATTATAAATTACTATGATAATGAAATTCCCCTACTTCCTAAAGAGATTATTGTT
GCGCATGAACTAGAAGAAATAGAAGATTTAGAAGAGTTCTTAAAAGATAGATTTGAAAAAAATATTCCAATTGTTTATCC
TAAAAGAGGTAAAAAAACAAAAATAGTTGAAGTAGCATTAAATAATTGTAAAGAGTTATTAAGACTTCAAAATGTAAACA
CTTCAAATATTTATGAAGAATTAAAAGAGTTATTTCATTTTGCAAATATACCTACTAGATTTGAGTGTTATGATAATTCA
CATATGATGGGACAAGCAACAGTTGGTGGTATGATTACATGGGAAGAAAAATTTTTAAAAAAAGATTATCGACATTATAA
TTTAGAAGCAAAAGATGAATATTCTCAAATGAAAGAGACTCTAATGAGAAGAGTTGATAGTTTTGAAAAAAATCCAGCAC
CTGATGTTTGGGTAATAGATGGAGGAGCGACTCTTTTAAATCTAGCTATTGATATAAGAAATTCTGTTGGAGTAAACTTA
GATATTATTGCTATTGCAAAAGAAAAACTTGATTTTAAAGCACATAGAGCAAAAGGTAGTGCAAAAGACATCATCTATTT
TGAAAAAGACAATACAATACAAAGAGTTGATTTACTTCCAAGTGATAAAAGATTACAATTTGTACAAAGATTAAGAGATG
AAGCACATAGATTTGCAATATCATTTCACAAAAAACAAAAAAGAAAAGAAGATAGTAAAATATCGTTATTACAAATAAAA
GGAATAGGTGAAGCAAAAGTTAAAAAGCTTCTTTTATACTTTGGTGAATTTGAGAAAATTAAGACAGCTTCAATTGAGGA
TTTAAAAGCTGTATTAAACGAAAAAGATGCTAAGGTACTATTTAACTATTTTAAAGAAATCAAGGAATAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.167

98.194

0.493

Multiple sequence alignment