Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AELL_RS05120 Genome accession   NZ_CP032097
Coordinates   993346..994695 (-) Length   449 a.a.
NCBI ID   WP_118916911.1    Uniprot ID   -
Organism   Arcobacter ellisii strain LMG 26155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988346..999695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AELL_RS05095 (AELL_1021) murJ 988575..989876 (-) 1302 WP_118916906.1 murein biosynthesis integral membrane protein MurJ -
  AELL_RS05100 (AELL_1022) - 989876..991450 (-) 1575 WP_118916907.1 endonuclease/exonuclease/phosphatase family protein -
  AELL_RS05105 (AELL_1023) - 991539..992198 (-) 660 WP_118916908.1 ferritin family protein -
  AELL_RS05110 (AELL_1024) - 992452..992856 (+) 405 WP_118916909.1 Fur family transcriptional regulator -
  AELL_RS05115 (AELL_1025) ybeY 992881..993300 (-) 420 WP_118916910.1 rRNA maturation RNase YbeY -
  AELL_RS05120 (AELL_1026) radA 993346..994695 (-) 1350 WP_118916911.1 DNA repair protein RadA Machinery gene
  AELL_RS05125 (AELL_1027) - 994793..995269 (+) 477 WP_118916912.1 RNase H family protein -
  AELL_RS05130 (AELL_1028) - 995275..996261 (-) 987 WP_118916913.1 lipid A deacylase LpxR family protein -
  AELL_RS05135 (AELL_1029) - 996324..996887 (+) 564 WP_118916914.1 YqiA/YcfP family alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49452.82 Da        Isoelectric Point: 6.1954

>NTDB_id=313727 AELL_RS05120 WP_118916911.1 993346..994695(-) (radA) [Arcobacter ellisii strain LMG 26155]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKNSSKIINTTSKAKPITQIEQDDVTRFSSYNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHDDLFLLSEIKLEEIQD
ELLRENYEICIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLISAKDIASKFFDKSKSQSGSALTVTMEGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVIAAIISSYRDRPISKESAFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAVIAQKTNLKLDIKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=313727 AELL_RS05120 WP_118916911.1 993346..994695(-) (radA) [Arcobacter ellisii strain LMG 26155]
ATGGCTAAGAAAAAAATAACACTTTTTGAATGTCAACACTGTGGAGAACAATCTACAAAATGGCTTGGAAAATGTCCAAA
TTGTGGCTCTTGGGATAGTTTTATTGAACTTAATCAAGAGCAACAAGAAGTTTTAAAAAATAGTTCAAAAATTATAAATA
CAACTTCAAAAGCAAAACCAATAACTCAAATTGAACAAGATGACGTTACAAGATTTTCTTCATACAATTATGAATTTGAC
TTAGTTTTAGGAGGAGGAATAGTTCCTGGAAGTTTAACTTTAATCGGTGGAAGTCCAGGAGTTGGGAAATCAACACTTTT
ACTTAAAGTTGCTGGAAGTATTGCAAAATCTGGTAAAAAAGTGCTTTATGTTTCAGGAGAAGAGAGTGCTGGACAAATAA
AACTACGAGCCAATAGACTTGATGCAAACCATGATGACCTATTCTTATTAAGTGAAATAAAACTTGAAGAGATTCAAGAT
GAACTTTTAAGAGAAAATTATGAAATTTGTATAATTGACTCTATACAAACTATCTATTCTTCAAATCTAACATCAGCTCC
AGGAAGTGTTTCACAGGTGAGAGAAATTACCTTTGAACTAATGAGAAAAGCAAAAGAGTCAAATATCGCTATGTTTATAA
TTGGACATATCACAAAAGATGGAAGTATTGCAGGTCCTAGAGTCTTAGAACATATGGTTGATACTGTTTTATATTTTGAG
GGAGAAGCAAGCAGGGAACTGCGAATGCTAAGAGGTTTTAAAAACCGATTTGGAAGTACAAGTGAAATTGGTATTTTTGA
AATGACGCAAGAGGGATTAATTAGTGCAAAAGATATAGCTTCAAAATTTTTTGATAAAAGTAAATCTCAAAGTGGCTCAG
CTTTAACAGTAACAATGGAAGGAAGTCGTGCAATCATCCTTGAAGTTCAAGCACTTGTAACTGAAAGCACTTATCCAAAT
CCAAAAAGAAGTGCAACTGGTTTTGATGCAAATAGACTTACTATGCTTTTAGCTTTACTTGAAAAAAAGATAGATTTGCC
ACTAAATAATTATGATGTTTTTATAAATATAAGTGGTGGAATAAAAATCAAAGAGAGTTCAGCAGATTTAGCTGTAATTG
CTGCAATAATATCTTCTTATAGAGATAGACCTATTTCAAAAGAGTCAGCTTTTATTGGTGAAGTTTCCCTAACAGGTGAA
ATAAAAGATGTTTATTCTATTGATTTAAGATTAAAAGAAGCACAAGCTCAAGGTATAAAAAAAGCGGTGATTGCTCAAAA
AACAAATCTGAAACTTGACATTAAAACTTTTGCGGTTGATGAAGTCTCTAAAATGATAGAATTATTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

49.883

95.1

0.474
  radA Streptococcus mitis SK321

49.42

95.991

0.474
  radA Streptococcus mitis NCTC 12261

49.42

95.991

0.474

Multiple sequence alignment