Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AELL_RS04660 Genome accession   NZ_CP032097
Coordinates   908887..910737 (-) Length   616 a.a.
NCBI ID   WP_118916831.1    Uniprot ID   A0A347U6Y5
Organism   Arcobacter ellisii strain LMG 26155     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903887..915737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AELL_RS04635 (AELL_0929) - 905094..905735 (-) 642 WP_118916826.1 adenylate kinase -
  AELL_RS04640 (AELL_0930) - 905864..906433 (+) 570 WP_118916827.1 adenylate kinase -
  AELL_RS04645 (AELL_0931) - 906434..907195 (+) 762 WP_118916828.1 molybdopterin-binding protein -
  AELL_RS04650 (AELL_0932) - 907197..907865 (-) 669 WP_118916829.1 tetratricopeptide repeat protein -
  AELL_RS04655 (AELL_0933) - 907862..908884 (-) 1023 WP_118916830.1 alanine racemase -
  AELL_RS04660 (AELL_0934) uvrC 908887..910737 (-) 1851 WP_118916831.1 excinuclease ABC subunit UvrC Machinery gene
  AELL_RS04665 (AELL_0935) - 910844..911485 (+) 642 WP_118916832.1 GNAT family N-acetyltransferase -
  AELL_RS04670 (AELL_0936) - 911469..912767 (-) 1299 WP_164967257.1 diguanylate cyclase -
  AELL_RS04675 (AELL_0937) - 913000..914091 (+) 1092 WP_118916834.1 response regulator -
  AELL_RS04680 (AELL_0938) - 914064..914819 (-) 756 WP_118916835.1 choline/ethanolamine kinase family protein -
  AELL_RS04685 (AELL_0939) pnuC 914809..915381 (-) 573 WP_118916836.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72061.37 Da        Isoelectric Point: 9.2703

>NTDB_id=313726 AELL_RS04660 WP_118916831.1 908887..910737(-) (uvrC) [Arcobacter ellisii strain LMG 26155]
MNLQDKLKQLPNDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPKLLPADKLGPRIYKMISEVVSLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNEDFPRLEITRKIHKGKNIKYFGPYSTGAKDMLDSIYEIVPLVQKKSC
VKGKTACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLLSKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAITSTNKKAVVVRMFLRDGKLTSSSHDFLKVDNFDEEFEFDYEEAYKRAIINYYDNEIPLLPKEI
LVGIELNDTSELEEFLQIRFNKKIKIINPKKDKKKDIVQIALSNCHELLRIDSSKNETNIYEELKELFNLQTLPFRIESF
DNSHMMGQATVGAMIVWDENLNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVL
SVGVNLDIIAIAKEKVDAKAHRAKGAAKDIIHYKNKNNEFKNFKLSTSDRRLQFVQRQRDEAHRFVINFHKKQKRAEDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASLEELKNVLNEKDANLLKNYFIIPKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=313726 AELL_RS04660 WP_118916831.1 908887..910737(-) (uvrC) [Arcobacter ellisii strain LMG 26155]
ATGAATTTACAAGACAAACTTAAACAACTTCCTAATGATGCTGGGGTTTATCAGTATTTTGATAAAGATGGTCACTTACT
TTATGTTGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCTTATTTCAAATTCACGCCAAAACTTCTTCCTGCTGATA
AATTAGGTCCAAGAATTTATAAAATGATTAGTGAAGTTGTAAGTCTTGAATGGATTGTTGTTCCTAATGAACATGATGCT
TTGATTTTGGAAAACTCTTTAATCAAACAACTAAAACCAAAATACAATATTTTACTTCGTGATGATAAAACTTATCCATA
TATTTTTATCGATTACAACGAAGATTTTCCAAGACTTGAAATCACAAGAAAAATCCATAAAGGCAAAAATATCAAATATT
TTGGACCATATTCGACTGGTGCAAAAGATATGCTTGATAGCATTTATGAAATAGTTCCATTAGTGCAAAAAAAATCTTGT
GTAAAAGGAAAAACTGCTTGTTTATTCCATCAAATACAAAAATGCCTAGCCCCTTGTGAAAATAAAATTTCAAAGGAAGA
GTACGCAAAAATCGTAGAAAATGCCCTAGAATATATCTATAATAAAACAAAACTTCTCTCAAAACTAAATGAAAAAATGA
TTCAATACTCAAATGATTTTAGATTTGAAGAAGCTATGACTTTAAGAGATAGAATAAAAACAATAGAAAAATCTCAAATA
AAATCAGGAATAGATTTAGCAACAAATGAAGATATAGATATTTTTGCAATCACTTCAACAAATAAAAAAGCTGTTGTTGT
ACGAATGTTTTTAAGAGATGGAAAATTAACCTCTTCAAGCCATGATTTTTTAAAGGTTGATAATTTTGATGAAGAGTTTG
AGTTTGATTATGAAGAGGCTTATAAAAGAGCAATTATTAACTATTATGATAATGAAATCCCACTTTTACCAAAAGAGATT
TTAGTGGGAATTGAACTAAATGATACAAGTGAACTTGAAGAGTTTTTACAAATAAGATTTAATAAAAAAATCAAAATCAT
AAATCCAAAAAAAGATAAGAAAAAAGATATTGTTCAAATCGCTCTTAGTAACTGCCATGAACTTTTACGAATAGATTCAA
GTAAAAATGAGACAAATATTTATGAAGAGTTAAAAGAGTTATTTAATCTTCAAACTCTTCCCTTTAGAATAGAGAGTTTC
GATAACTCTCACATGATGGGACAAGCAACTGTTGGAGCTATGATTGTTTGGGATGAAAATCTAAACTCATTTGATAAAAA
AGCTTTTAGACACTATAACCTTGAATCAAAAGATGAATACTCTCAAATGAGAGAGATGTTAATACGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATTATTGATGGTGGCGAGACTCTTTTGAAATTAGCCTATGATATTGTTTTA
TCAGTTGGAGTAAATCTTGATATAATTGCAATCGCGAAAGAAAAAGTAGATGCAAAAGCTCACAGAGCAAAAGGTGCAGC
AAAAGATATTATTCATTATAAAAATAAAAACAATGAATTTAAAAATTTTAAATTATCTACAAGTGATAGAAGACTACAAT
TCGTTCAAAGACAAAGAGACGAAGCCCATAGATTTGTAATCAATTTCCACAAAAAACAAAAAAGAGCAGAAGATAAACAA
ATATCTTTATTGCAAATAAAAGGAATTGGTGAAGCAAAAATCAAAAAACTTCTTTTATATTTTGGAGAATTTGAGAAAAT
CAAAAACGCATCTTTAGAAGAGTTAAAAAATGTTTTAAATGAAAAAGATGCAAATTTACTAAAAAATTATTTTATTATTC
CAAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A347U6Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.078

97.89

0.5

Multiple sequence alignment