Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3157_RS18345 Genome accession   NZ_CP038386
Coordinates   3798811..3799416 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O55:H7 strain DEC5D     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3793811..3804416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3157_RS18325 (E3157_18745) aes 3793952..3794911 (+) 960 WP_000801801.1 acetyl esterase -
  E3157_RS18330 (E3157_18750) hemH 3794908..3795870 (-) 963 WP_001250105.1 ferrochelatase -
  E3157_RS18335 (E3157_18755) adk 3796002..3796646 (-) 645 WP_001417730.1 adenylate kinase -
  E3157_RS18340 (E3157_18760) htpG 3796827..3798701 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  E3157_RS18345 (E3157_18765) recR 3798811..3799416 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E3157_RS18350 (E3157_18770) ybaB 3799416..3799745 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E3157_RS18355 (E3157_18775) dnaX 3799798..3801729 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  E3157_RS18360 (E3157_18780) apt 3801858..3802409 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  E3157_RS18365 (E3157_18785) ybaN 3802562..3802939 (-) 378 WP_001188905.1 DUF454 family protein -
  E3157_RS18370 (E3157_18790) priC 3803009..3803536 (+) 528 WP_000844883.1 primosomal replication protein N'' -
  E3157_RS18375 (E3157_18795) rsmS 3803550..3803714 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=313719 E3157_RS18345 WP_001195025.1 3798811..3799416(-) (recR) [Escherichia coli O55:H7 strain DEC5D]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=313719 E3157_RS18345 WP_001195025.1 3798811..3799416(-) (recR) [Escherichia coli O55:H7 strain DEC5D]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment