Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D1115_RS14390 Genome accession   NZ_CP032093
Coordinates   2978573..2979361 (+) Length   262 a.a.
NCBI ID   WP_128812010.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973573..2984361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS14375 (D1115_14500) - 2974699..2977017 (+) 2319 WP_128812004.1 Tex family protein -
  D1115_RS14380 (D1115_14505) - 2977129..2977593 (-) 465 WP_128812006.1 ATP-dependent Lon protease -
  D1115_RS14385 (D1115_14510) bioH 2977724..2978488 (-) 765 WP_164837231.1 pimeloyl-ACP methyl ester esterase BioH -
  D1115_RS14390 (D1115_14515) comF 2978573..2979361 (+) 789 WP_128812010.1 ComF family protein Machinery gene
  D1115_RS14395 (D1115_14520) nfuA 2979459..2980043 (+) 585 WP_128812012.1 Fe-S biogenesis protein NfuA -
  D1115_RS14400 (D1115_14525) nudE 2980212..2980774 (+) 563 Protein_2630 ADP compounds hydrolase NudE -
  D1115_RS14405 (D1115_14530) cysQ 2980837..2981664 (+) 828 WP_128812014.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  D1115_RS14410 (D1115_14535) - 2982063..2982824 (-) 762 WP_128812016.1 type II secretion system protein N -
  D1115_RS14415 (D1115_14540) - 2982826..2983317 (-) 492 WP_164837263.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29648.10 Da        Isoelectric Point: 8.9084

>NTDB_id=313707 D1115_RS14390 WP_128812010.1 2978573..2979361(+) (comF) [Vibrio alfacsensis strain CAIM 1831]
MLSHQWQNIMHRVLGSQCGLCRFPINAYQATNPLRWCEHCFAQLNPIQRCARCGLAMTNEQAVTTVLASTKQANQINQTT
QIDQAKIPCGACLRDPPPWQRLFTLGDYDFPLSAQVQRFKDDGEPWHVNALTQLLAQRIEHPAPVITCVPLHWQRYLKRG
FNQSHTLARYLANHLEVRFEPNVFKRIKSAPSQRGHKKSNREQNLKGAFALKGKVRDSHVAIVDDVVTTGSTVRQLCDLL
LEVGVESIDIYCICRTPAPGSL

Nucleotide


Download         Length: 789 bp        

>NTDB_id=313707 D1115_RS14390 WP_128812010.1 2978573..2979361(+) (comF) [Vibrio alfacsensis strain CAIM 1831]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGTGTGTTGGGCAGTCAATGTGGTTTATGTCGATTTCCAATTAACGC
CTATCAAGCGACCAATCCACTACGCTGGTGCGAGCACTGTTTTGCTCAACTTAACCCCATACAACGTTGCGCTCGGTGCG
GTTTAGCGATGACAAATGAGCAGGCTGTTACCACCGTTCTTGCTTCTACTAAACAAGCGAATCAAATCAACCAAACGACT
CAAATAGACCAAGCTAAAATACCCTGTGGGGCATGCCTGCGCGATCCCCCGCCATGGCAGCGCTTGTTCACGCTTGGTGA
TTATGACTTCCCACTCTCAGCCCAAGTTCAACGATTTAAAGACGACGGTGAACCTTGGCACGTTAATGCACTCACTCAAT
TACTTGCACAACGAATTGAGCATCCCGCGCCAGTTATCACCTGCGTTCCACTGCATTGGCAACGGTACCTAAAGCGAGGT
TTCAATCAAAGCCATACTCTTGCAAGATACTTAGCAAACCACCTTGAGGTAAGGTTTGAACCAAACGTGTTTAAACGCAT
CAAAAGTGCTCCATCACAACGGGGGCATAAGAAAAGCAACCGGGAGCAGAATTTGAAAGGTGCATTTGCGCTAAAAGGCA
AAGTGCGCGATTCTCATGTCGCAATTGTTGATGATGTCGTCACAACGGGCAGTACCGTCCGACAATTATGTGATTTACTA
CTTGAAGTCGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCTGGCTCACTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(165-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

69.847

100

0.698
  comF Vibrio cholerae strain A1552

45.946

98.855

0.454

Multiple sequence alignment