Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   D1115_RS10175 Genome accession   NZ_CP032093
Coordinates   2102447..2103850 (-) Length   467 a.a.
NCBI ID   WP_164837208.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2097447..2108850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS10140 (D1115_10230) moaE 2098026..2098481 (-) 456 WP_128811249.1 molybdopterin synthase catalytic subunit MoaE -
  D1115_RS10145 (D1115_10235) moaD 2098483..2098740 (-) 258 WP_128811250.1 molybdopterin synthase sulfur carrier subunit -
  D1115_RS10150 (D1115_10240) moaC 2098740..2099216 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  D1115_RS10155 (D1115_10245) moaB 2099243..2099755 (-) 513 WP_128811251.1 molybdenum cofactor biosynthesis protein B -
  D1115_RS10160 (D1115_10250) moaA 2099852..2100841 (-) 990 WP_128811252.1 GTP 3',8-cyclase MoaA -
  D1115_RS10165 (D1115_10255) - 2101136..2102029 (+) 894 WP_128811253.1 YvcK family protein -
  D1115_RS10170 (D1115_10260) luxU 2102106..2102450 (-) 345 WP_128811254.1 quorum-sensing phosphorelay protein LuxU -
  D1115_RS10175 (D1115_10265) luxO 2102447..2103850 (-) 1404 WP_164837208.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  D1115_RS10180 (D1115_10270) uvrB 2104171..2106201 (-) 2031 WP_128811255.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51867.33 Da        Isoelectric Point: 6.6602

>NTDB_id=313701 D1115_RS10175 WP_164837208.1 2102447..2103850(-) (luxO) [Vibrio alfacsensis strain CAIM 1831]
MQHKPDGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGREAIDSLNHRTPDLILLDLRLPDMTGMDVLHKVKDSH
PSVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEANNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQDVIDKFNRYEWPGNVRQLQNVLRNIVVLNNGKEITIEMLPPPLNMPLVGSA
IVSPMPQKAITASDITPLWMTEKEAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWGTKEEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=313701 D1115_RS10175 WP_164837208.1 2102447..2103850(-) (luxO) [Vibrio alfacsensis strain CAIM 1831]
ATGCAACATAAACCAGATGGTCAAAAGTCTCGTTATCTTTTGATGGTTGAAGATACCGCGTCTGTCGCCGCATTATACCG
TTCATACCTTACACCTCTTGGTATCGACATTAACATTGTTGGTACTGGCCGAGAAGCGATCGACAGTTTAAATCATCGCA
CCCCTGACCTTATTCTGTTAGATCTTCGCTTGCCAGATATGACGGGAATGGATGTTCTACATAAGGTCAAAGATAGTCAT
CCAAGTGTGCCTGTTATCTTTATGACTGCTCATGGCTCTATTGATACTGCAGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTGATCAAACCATGTGAAGCAGACCGATTACGCGTTACTGTAAATAATGCGATTCGCAAAGCCACTAAGCTGAAAA
ACGAAGCTAACAATCCGGGCAACCAAAGTTATCAAGGTTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGGACT
ATTGACTCCGCAGCCAGTAGTAAAGCGAGTATCTTTATCACCGGTGAGAGTGGTACGGGTAAAGAAGTGTGTGCTGAAGC
CATTCACGCAGCGAGTAAACGCGGTGATAAGCCATTTATTGCTATTAACTGTGCTGCCATTCCAAAAGACCTCATCGAGA
GTGAGCTGTTTGGCCACGTAAAAGGTGCGTTTACGGGCGCTGCCAATGATCGCCAAGGTGCCGCAGAACTCGCCGATGGT
GGTACCTTGTTCCTTGATGAGTTGTGTGAAATGGACTTGGATTTACAAACCAAGCTTTTGCGATTCATCCAAACGGGGAC
ATTCCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTTGTATGTGCGACGAACCGAGACCCATGGAAAG
AGGTACAAGAGGGGCGCTTTCGTGAAGATTTGTATTACCGATTATATGTGATTCCTTTGCACCTACCACCACTGAGAGAA
CGTGGTGAGGATGTTATCGAAATCGCTTATTCGTTATTAGGTTACATGTCTCATGAAGAAGGTAAGAACTTTGTTCGTTT
CTCTCAAGATGTGATTGATAAATTTAATCGCTATGAGTGGCCAGGAAACGTTCGTCAATTGCAAAACGTTCTGAGGAATA
TCGTGGTGCTAAATAATGGTAAAGAGATTACCATCGAGATGCTACCGCCTCCGCTTAATATGCCGCTTGTTGGCAGTGCC
ATTGTAAGCCCAATGCCCCAAAAGGCGATAACGGCGTCAGACATTACCCCGCTATGGATGACTGAAAAAGAAGCCATTGA
GCAGGCGATCAAAGCTTGTGATGGGAATATTCCTAGAGCCGCGGGTTATTTAGATGTTAGCCCATCAACGATTTATCGTA
AGCTCCAAGCTTGGGGCACGAAAGAAGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.893

95.717

0.803

Multiple sequence alignment