Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E3157_RS09330 Genome accession   NZ_CP038386
Coordinates   1975193..1976620 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O55:H7 strain DEC5D     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970193..1981620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3157_RS09300 (E3157_09460) yeeZ 1970248..1971072 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E3157_RS09305 (E3157_09465) yeeY 1971118..1972047 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  E3157_RS09310 (E3157_09470) yoeI 1972262..1972324 (+) 63 WP_010723108.1 membrane protein YoeI -
  E3157_RS09315 (E3157_09475) plaP 1972314..1973672 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E3157_RS09320 (E3157_09480) tsuA 1973851..1974909 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  E3157_RS09325 (E3157_09485) tsuB 1974923..1975150 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E3157_RS09330 (E3157_09490) sbcB 1975193..1976620 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  E3157_RS09335 (E3157_09495) dacD 1976829..1977995 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E3157_RS09340 (E3157_09500) sbmC 1978114..1978587 (+) 474 WP_001105369.1 DNA gyrase inhibitor SbmC -
  E3157_RS09345 (E3157_09505) yeeA 1978786..1979844 (+) 1059 WP_001202490.1 FUSC family protein -
  E3157_RS09350 (E3157_09510) tmaR 1980016..1980345 (+) 330 WP_000450409.1 DUF496 family protein -
  E3157_RS09355 (E3157_09515) - 1980446..1980628 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  E3157_RS09360 (E3157_09520) - 1980691..1980828 (+) 138 Protein_1847 transposase domain-containing protein -
  E3157_RS09365 (E3157_09525) - 1981117..1981209 (-) 93 Protein_1848 DUF957 domain-containing protein -
  E3157_RS09370 (E3157_09530) yeeW 1981243..1981437 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=313699 E3157_RS09330 WP_000980540.1 1975193..1976620(-) (sbcB) [Escherichia coli O55:H7 strain DEC5D]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=313699 E3157_RS09330 WP_000980540.1 1975193..1976620(-) (sbcB) [Escherichia coli O55:H7 strain DEC5D]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment