Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D1115_RS02960 Genome accession   NZ_CP032093
Coordinates   572909..573427 (+) Length   172 a.a.
NCBI ID   WP_128810206.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 567909..578427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS02950 (D1115_02955) gshA 570601..572168 (+) 1568 Protein_480 glutamate--cysteine ligase -
  D1115_RS02955 (D1115_02960) - 572214..572819 (+) 606 WP_128810205.1 hypothetical protein -
  D1115_RS02960 (D1115_02965) luxS 572909..573427 (+) 519 WP_128810206.1 S-ribosylhomocysteine lyase Regulator
  D1115_RS02965 (D1115_02970) - 573546..574820 (-) 1275 WP_128810207.1 HlyC/CorC family transporter -
  D1115_RS02970 (D1115_02975) - 575065..575859 (-) 795 WP_128810208.1 cytochrome C assembly family protein -
  D1115_RS02975 (D1115_02980) ffh 576073..577452 (+) 1380 WP_128810209.1 signal recognition particle protein -
  D1115_RS02980 (D1115_02985) rpsP 577660..577908 (+) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19167.92 Da        Isoelectric Point: 4.8637

>NTDB_id=313691 D1115_RS02960 WP_128810206.1 572909..573427(+) (luxS) [Vibrio alfacsensis strain CAIM 1831]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGERVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILDSGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=313691 D1115_RS02960 WP_128810206.1 572909..573427(+) (luxS) [Vibrio alfacsensis strain CAIM 1831]
ATGCCTTTATTAGACAGTTTTACCGTAGATCACACTCGTATGCATGCCCCAGCGGTTCGCGTGGCAAAAACAATGCAAAC
TCCAAAAGGGGATACGATCACAGTCTTTGATTTACGTTTTACCGCCCCAAACAAAGACATTCTTTCTGAGAAAGGGATTC
ATACGTTAGAGCACTTGTATGCTGGCTTTATGCGCAATCACCTAAATGGTGAGCGCGTTGAAATCATTGATATTTCGCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTCGCTGACGCCTGGATTGCTGC
AATGGAGGATGTGCTAAAGGTTGAGAGTCAAAATAAAATCCCAGAGCTGAATGAATACCAATGTGGTACGGCTGCGATGC
ATTCATTAGATGAAGCAAAGCAAATCGCGCAGAATATTCTTGATTCGGGTGTGGCGGTTAACAAGAATGATGAACTTGCC
TTACCAGAATCGATGCTGAAAGAACTTCGCATAGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment