Detailed information NTG0313673

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0907_RS13745
• Genome accession: NZ_CP032090
• Coordinates: 3055977..3056873 (+)
• Length: 298 a.a.
• NCBI ID: WP_118844623.1
• Uniprot ID: -
• Organism: Pseudoalteromonas lipolytica strain HJ51
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3050977..3061873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0907_RS13720 (D0907_13720)	nadC	3051604..3052452 (+)	849	WP_074988951.1	carboxylating nicotinate-nucleotide diphosphorylase	-
D0907_RS13725 (D0907_13725)	-	3052950..3053390 (+)	441	WP_118844620.1	pilin	-
D0907_RS21220 (D0907_13730)	-	3053445..3053834 (+)	390	WP_279636386.1	pilin	-
D0907_RS13735 (D0907_13735)	-	3053831..3054439 (-)	609	WP_118844822.1	fimbrial assembly protein	-
D0907_RS13740 (D0907_13740)	pilC	3054571..3055797 (+)	1227	WP_118844622.1	type II secretion system F family protein	Machinery gene
D0907_RS13745 (D0907_13745)	pilD	3055977..3056873 (+)	897	WP_118844623.1	prepilin peptidase	Machinery gene
D0907_RS13750 (D0907_13750)	coaE	3056876..3057472 (+)	597	WP_118844624.1	dephospho-CoA kinase	-
D0907_RS13755 (D0907_13755)	pilB	3057647..3059323 (+)	1677	WP_118844625.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0907_RS13760 (D0907_13760)	yacG	3059391..3059624 (+)	234	WP_036965896.1	DNA gyrase inhibitor YacG	-
D0907_RS13765 (D0907_13765)	-	3059686..3060216 (-)	531	WP_118844626.1	Spy/CpxP family protein refolding chaperone	-
D0907_RS13770 (D0907_13770)	-	3060388..3061077 (+)	690	WP_118844627.1	response regulator	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 32999.41 Da
• Isoelectric Point: 5.6507

>NTDB_id=313673 D0907_RS13745 WP_118844623.1 3055977..3056873(+) (pilD) [Pseudoalteromonas lipolytica strain HJ51]
MQNFFLDIATVMQSQQWFYLLTVGLVSLCIGSFLNVVIYRLPLMMKQEWQSECRLLLADELTINHTEEPTPFNLVTPNST
CPQCKAPIKIWQNIPVISWLILKGRCASCKAPISVRYPIVEMLTASLSLAVAVVFGASELALLYIVITWVLIALTFIDID
HMLLPDQLTLPLVWLALIAAVMNITIAPSDAIIGAAIGYLSLWSVYWLFKLATGKEGMGYGDFKLLAVFGSLLGWQAILT
IVLLSSVVGALIGMLQIIIQGKDKTTPIPFGPYLAIAGWVTLLWGEQIQTTYFSYLGH

Nucleotide

• Length: 897 bp

>NTDB_id=313673 D0907_RS13745 WP_118844623.1 3055977..3056873(+) (pilD) [Pseudoalteromonas lipolytica strain HJ51]
ATGCAAAATTTTTTCCTTGATATAGCCACCGTGATGCAATCTCAACAGTGGTTTTATTTGTTAACTGTAGGACTTGTAAG
TCTGTGTATTGGTAGCTTTTTAAATGTCGTTATTTACAGGCTACCACTGATGATGAAACAAGAATGGCAATCAGAGTGCC
GTCTGTTATTGGCCGATGAGCTAACAATTAACCATACTGAAGAGCCTACTCCCTTTAATTTAGTCACACCCAATTCAACC
TGCCCACAATGTAAGGCACCGATTAAGATTTGGCAGAACATTCCTGTTATCAGCTGGTTAATACTCAAAGGCCGCTGTGC
AAGTTGTAAGGCACCAATTTCTGTTCGCTACCCCATTGTTGAAATGCTAACAGCCAGCTTAAGTCTCGCGGTTGCAGTTG
TATTTGGCGCATCTGAACTTGCCTTACTTTATATTGTAATCACATGGGTGCTCATTGCGCTTACGTTCATTGATATTGAT
CATATGCTGCTGCCTGACCAACTTACCTTACCGCTTGTTTGGCTTGCATTGATTGCAGCCGTGATGAACATCACAATCGC
CCCTTCTGATGCGATTATTGGCGCTGCAATTGGCTATTTAAGTTTATGGAGTGTGTATTGGCTCTTTAAACTTGCTACTG
GAAAAGAAGGCATGGGGTATGGCGATTTTAAATTACTCGCGGTATTTGGATCGTTACTTGGTTGGCAGGCTATTTTAACT
ATCGTGCTGCTTTCGAGTGTCGTTGGCGCTCTTATTGGTATGCTGCAAATTATTATTCAAGGCAAAGATAAAACCACGCC
TATTCCCTTTGGCCCCTACCTTGCGATAGCCGGTTGGGTAACCTTATTGTGGGGTGAGCAAATTCAAACAACCTATTTTA
GCTATTTAGGTCATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-135)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.355	96.309	0.523
pilD	Acinetobacter nosocomialis M2	54.007	96.309	0.52
pilD	Vibrio campbellii strain DS40M4	52.797	95.973	0.507
pilD	Vibrio cholerae strain A1552	53.047	93.624	0.497
pilD	Neisseria gonorrhoeae MS11	41.606	91.946	0.383