Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   SEZ_RS03320 Genome accession   NC_011134
Coordinates   683684..685486 (+) Length   600 a.a.
NCBI ID   WP_012515302.1    Uniprot ID   B4U209
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 678684..690486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS03300 (Sez_0656) queA 679737..680764 (-) 1028 Protein_618 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SEZ_RS03305 (Sez_0658) nagB 681033..681737 (+) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  SEZ_RS03310 (Sez_0659) - 681909..682625 (+) 717 WP_012515300.1 pseudouridine synthase -
  SEZ_RS03315 (Sez_0660) - 682717..683694 (+) 978 WP_012515301.1 competence protein CoiA family protein -
  SEZ_RS03320 (Sez_0661) pepF 683684..685486 (+) 1803 WP_012515302.1 oligoendopeptidase F Regulator
  SEZ_RS03325 (Sez_0662) - 685656..686213 (+) 558 WP_012515303.1 GNAT family N-acetyltransferase -
  SEZ_RS03330 (Sez_0663) - 686203..686835 (+) 633 WP_012515304.1 HAD-IA family hydrolase -
  SEZ_RS03335 (Sez_0664) - 686886..687524 (+) 639 WP_038674841.1 HAD family hydrolase -
  SEZ_RS03340 (Sez_0665) - 687607..688314 (+) 708 WP_041785372.1 O-methyltransferase -
  SEZ_RS03345 (Sez_0666) prsA 688377..689378 (+) 1002 WP_012515307.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 600 a.a.        Molecular weight: 69065.89 Da        Isoelectric Point: 4.6614

>NTDB_id=31367 SEZ_RS03320 WP_012515302.1 683684..685486(+) (pepF) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=31367 SEZ_RS03320 WP_012515302.1 683684..685486(+) (pepF) [Streptococcus equi subsp. zooepidemicus MGCS10565]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
GACAGAAGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCCAAGTATCAGGAATATCAGGCAAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTTTC
TTTTTATGAGCCAGAGTTTATGGCCTTGAGTCAAGAGACCTATCAGGCCTTCTTAGCGGAGAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGATAAATTGTTCAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTCGATAATGCCGATATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCTAAAGACCGCAAGGTGCGTAGGGCGG
CCTATGAGGCGATGTACAGCACCTATGAGCAATTCCAGCATACCTACGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGCCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACGCTAGTGCATGAGACAGGCCATAGCCTGCACTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACTGAGGC
CTTGTTACATGAGGTGCAGGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGCGGAACGGTTT
TTCGTCAGACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCAGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATTCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACTTATCTGAAGTCTGGAAATTCAGATTATCCTCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGGGATTACCTAGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B4U209

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73.167

100

0.732


Multiple sequence alignment