Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DVB37_RS16850 Genome accession   NZ_CP032084
Coordinates   3745517..3746878 (-) Length   453 a.a.
NCBI ID   WP_046804723.1    Uniprot ID   -
Organism   Achromobacter sp. B7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740517..3751878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVB37_RS16825 (DVB37_16825) - 3740876..3741877 (+) 1002 WP_046804719.1 tripartite tricarboxylate transporter substrate binding protein -
  DVB37_RS16830 (DVB37_16830) - 3741952..3742923 (+) 972 WP_104144410.1 tripartite tricarboxylate transporter substrate binding protein -
  DVB37_RS16835 (DVB37_16835) - 3743074..3744030 (+) 957 WP_046804721.1 2-hydroxyacid dehydrogenase -
  DVB37_RS16840 (DVB37_16840) - 3744192..3744428 (-) 237 WP_046804722.1 hypothetical protein -
  DVB37_RS16845 (DVB37_16845) - 3744629..3745468 (-) 840 WP_120157533.1 sulfite exporter TauE/SafE family protein -
  DVB37_RS16850 (DVB37_16850) radA 3745517..3746878 (-) 1362 WP_046804723.1 DNA repair protein RadA Machinery gene
  DVB37_RS16855 (DVB37_16855) - 3747230..3747859 (+) 630 WP_120156255.1 hypothetical protein -
  DVB37_RS16860 (DVB37_16860) hpaR 3748003..3748473 (+) 471 WP_104144408.1 homoprotocatechuate degradation operon regulator HpaR -
  DVB37_RS16865 (DVB37_16865) hpaD 3748501..3749352 (-) 852 WP_046804726.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  DVB37_RS16870 (DVB37_16870) hpaE 3749375..3750841 (-) 1467 WP_120156256.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48225.28 Da        Isoelectric Point: 6.7633

>NTDB_id=313631 DVB37_RS16850 WP_046804723.1 3745517..3746878(-) (radA) [Achromobacter sp. B7]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSTPAAAAHRYAPLASASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLDLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHSPN
PRRLTVGLEGNRLAMLLAVMHRHAGVTTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=313631 DVB37_RS16850 WP_046804723.1 3745517..3746878(-) (radA) [Achromobacter sp. B7]
ATGGCCAAATCCCGAACCGTATATGTGTGCGCCGACTGCGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTCGAGTCCTCGACGCCCGCCGCCGCCGCGCACCGTTACGCGCCGCTGGCCT
CTGCCAGCCCGGTGCGCAGCCTGTCTGAAATCGAAGCCCGCGAAACACCACGCCAGCCGACCGGGCTGGACGAATTCGAC
CGCGTCCTGGGCGGCGGCCTGGTCGCGGGCGCCGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAATCCACGCTGTT
GTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTATGTGACGGGCGAGGAATCGGCCGAACAGGTCGCCT
TGCGCGCACGCCGGCTGGACTTGCAGACGGGCAACGTGAACCTGCTGGCCGAGATCCGCCTGGAAGCGATCCAGGCCGCC
GTGTCCGAACAGAAGCCTACCGTGGCCGTCATCGACTCGATCCAGACCCTGTACAGCGGCGAACTCAGCGCCGCGCCGGG
TTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAATTGACGCGCCTGGCCAAGCAGACCGGCATCGCGATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATTGTGGACACCGTGCTGTATTTCGAAGGC
GACACGCATTCCTCGTTCCGGCTGGTGCGCGCATTCAAGAACCGCTTTGGCGCCGTCAACGAGCTGGGCGTTTTTGCGAT
GACCGACCGTGGCCTGCGCGGCGTGGCCAACCCGTCCGCGCTGTTCCTGTCCCAGCACGAGCAGCAGGTGGCCGGTTCCT
GCGTGATGGCCACGCAAGAGGGCACGCGCCCGCTGCTGGTTGAGATCCAGGCCTTGGTCGACAGTTCGCATTCGCCCAAT
CCGCGCCGCCTGACGGTGGGCCTTGAAGGCAATCGGCTGGCCATGTTGCTGGCGGTGATGCACCGGCACGCGGGTGTCAC
CACGTTTGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCACCGAACCGGCCGCCGACTTGCCGGTGCTGC
TGGCCATCATGTCTTCGTTGCGCGACAAGCCCTTGCCGCGCGGCCTGATCGCGTTCGGCGAAGTTGGTCTGGCCGGCGAG
ATCCGTCCCGCGCCGCGCGGTCAGGAACGCTTGCGCGAAGCCGCCAAGTTGGGTTTTTCGATTGCGCTGATTCCCAAGGC
CAACGCACCGCGCCAACCCATTGAAGGGTTGGAGATCTGGGCGGTGGACCGGCTGGACGCCGCGTTGGACAAGTTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.494
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455
  radA Streptococcus mitis SK321

48.357

94.04

0.455

Multiple sequence alignment