Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DVB37_RS00660 Genome accession   NZ_CP032084
Coordinates   139678..141123 (+) Length   481 a.a.
NCBI ID   WP_104144682.1    Uniprot ID   -
Organism   Achromobacter sp. B7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134678..146123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVB37_RS00645 (DVB37_00645) leuA 135686..137398 (-) 1713 WP_046803933.1 2-isopropylmalate synthase -
  DVB37_RS00650 (DVB37_00650) - 137868..138845 (-) 978 WP_120153406.1 tripartite tricarboxylate transporter substrate binding protein -
  DVB37_RS00655 (DVB37_00655) - 139035..139679 (-) 645 WP_046803931.1 hypothetical protein -
  DVB37_RS00660 (DVB37_00660) rpoN/rpoN1 139678..141123 (+) 1446 WP_104144682.1 RNA polymerase factor sigma-54 Machinery gene
  DVB37_RS00665 (DVB37_00665) - 141245..141526 (+) 282 WP_006216781.1 bacterioferritin-associated ferredoxin -
  DVB37_RS00670 (DVB37_00670) - 141681..142589 (+) 909 WP_120153408.1 DMT family transporter -
  DVB37_RS00675 (DVB37_00675) bfr 142968..143444 (+) 477 WP_046803928.1 bacterioferritin -
  DVB37_RS00680 (DVB37_00680) - 143542..144228 (-) 687 WP_104144683.1 hypothetical protein -
  DVB37_RS00685 (DVB37_00685) - 144253..145860 (-) 1608 WP_046803926.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52565.98 Da        Isoelectric Point: 4.8593

>NTDB_id=313621 DVB37_RS00660 WP_104144682.1 139678..141123(+) (rpoN/rpoN1) [Achromobacter sp. B7]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLADNPLLEREDDTPAAEAQAESERESSVDDDTP
AAERDAPVEEMPGSGGVYSDDDSGLPEAARPDTLREHLLGQLMLTRAAPRDAALAALLIDELDENGYLGSPLEEILTWLP
AEMEPDLDELRAALSLLQSFDPVGIGARDMADCLVLQLRHPDLSRLPEAADPAVLACAREICARHLPLLATGNAARLCAA
VGCDEAIFRAAHTLILRLEPRPGRAWTVPAADYAVPDVIVRKARRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QTQLQQAKWMIRNVEQRFDTILRVAQAIVERQTAFFSQGPSAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPATLRKAQASA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=313621 DVB37_RS00660 WP_104144682.1 139678..141123(+) (rpoN/rpoN1) [Achromobacter sp. B7]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGCCAGCACCTGACGCTGACCCCTCAATTGCA
GCAATCGATACGATTGTTGCAGTTGTCCACGCTCGACCTGGAAGCCGAGATCTCGCAAGTGCTCGCGGACAACCCCCTGC
TGGAACGGGAAGACGACACCCCCGCCGCCGAGGCGCAAGCCGAATCCGAACGCGAATCCTCGGTCGATGACGACACCCCC
GCAGCGGAACGCGATGCCCCCGTCGAAGAAATGCCTGGCTCGGGCGGCGTGTATTCGGATGATGACTCCGGGCTGCCCGA
AGCGGCGCGCCCGGACACGTTGCGCGAACACCTGCTGGGCCAGCTGATGCTGACGCGGGCGGCGCCGCGCGATGCTGCCC
TGGCGGCCTTGCTGATCGACGAGCTGGATGAAAACGGCTACCTGGGCTCGCCGCTTGAGGAAATCCTGACGTGGCTGCCG
GCCGAAATGGAACCCGACCTGGATGAGTTGCGGGCGGCGCTGTCGCTGCTGCAATCGTTCGACCCCGTCGGCATCGGCGC
GCGCGACATGGCGGATTGCCTGGTGTTGCAATTGCGCCACCCCGACCTCTCGCGTTTGCCCGAAGCGGCCGATCCGGCCG
TCCTGGCCTGCGCCCGCGAAATCTGTGCGCGCCATCTGCCCTTGCTGGCCACCGGTAACGCTGCACGCCTGTGCGCTGCC
GTGGGCTGCGACGAGGCAATTTTCCGCGCGGCCCACACGCTGATCCTGCGGCTGGAGCCCCGGCCCGGACGCGCCTGGAC
CGTGCCTGCGGCGGACTACGCTGTGCCCGACGTCATCGTGCGCAAGGCGCGGCGCGGCTGGCAGGTCACGCTGAACAGCG
CCGCCGTTCCCCGGCTGCAAATCAACGGGCTGTATGCACAGATGCTGGGCAACCAAAAGGAATCCGCGCACGCGGGCCTG
CAAACCCAGTTGCAGCAAGCCAAATGGATGATACGTAACGTGGAGCAGCGCTTCGACACGATCCTGCGTGTCGCCCAGGC
CATCGTCGAACGCCAGACGGCGTTTTTCAGCCAGGGGCCGTCGGCCATGCGTCCGCTGATCCTGAAAGACATCGCGGGTG
AGCTCGGGCTGCACGAATCGACCATTTCGCGCGCCACAACGCAGAAGTACATGCTTACTCCGTTTGGCACGCTGGAGCTC
AAGCGCTTCTTCGGGACGGGGGTCTCCACCGACGGCGGTGACGCTACGTCGGCCACGGCGGTGCAGACTTTCATCCGCCA
AATGGTCGCGGAAGAGAACCGGGCCAAGCCCTTGTCGGACAGCCAGATCATGCAGAAACTGGCCGATCAGGGGATAGTTA
TCGCCCGTCGGACGGTGGCAAAGTACCGAGAAGCGCTGCGAATTGCCCCGGCTACGCTGCGTAAGGCCCAAGCCTCGGCG
CGTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.109

100

0.516

Multiple sequence alignment