Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D2E16_RS11470 Genome accession   NZ_CP032064
Coordinates   2367363..2368730 (-) Length   455 a.a.
NCBI ID   WP_192369554.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362363..2373730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS11445 (D2E16_11805) - 2362492..2363352 (-) 861 WP_125070691.1 class C sortase -
  D2E16_RS11450 (D2E16_11810) - 2363349..2364209 (-) 861 WP_024376112.1 class C sortase -
  D2E16_RS11455 (D2E16_11815) - 2364187..2365098 (-) 912 WP_029176506.1 class C sortase -
  D2E16_RS11460 (D2E16_11830) - 2365778..2366536 (-) 759 WP_029176504.1 TIGR00266 family protein -
  D2E16_RS11465 (D2E16_11835) - 2366745..2367239 (-) 495 WP_029177756.1 beta-class carbonic anhydrase -
  D2E16_RS11470 (D2E16_11840) radA 2367363..2368730 (-) 1368 WP_192369554.1 DNA repair protein RadA Machinery gene
  D2E16_RS11475 (D2E16_11845) - 2368737..2369270 (-) 534 WP_192369553.1 histidine phosphatase family protein -
  D2E16_RS11480 (D2E16_11850) - 2369277..2369720 (-) 444 WP_002939955.1 dUTP diphosphatase -
  D2E16_RS11485 (D2E16_11855) - 2369739..2370725 (-) 987 WP_192369552.1 virulence RhuM family protein -
  D2E16_RS11490 (D2E16_11860) - 2370999..2371865 (-) 867 WP_192369551.1 helix-turn-helix domain-containing protein -
  D2E16_RS11495 (D2E16_11865) - 2372206..2372490 (+) 285 WP_029177760.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49887.38 Da        Isoelectric Point: 6.1911

>NTDB_id=313552 D2E16_RS11470 WP_192369554.1 2367363..2368730(-) (radA) [Streptococcus suis strain YSJ17]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERISLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKIPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=313552 D2E16_RS11470 WP_192369554.1 2367363..2368730(-) (radA) [Streptococcus suis strain YSJ17]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTTGCGGAAGTCAAAAATGAGCGGATCAGCTTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGCGTGGTGCCGGGAAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGGAAGTCCACCTTGCT
CCTGCAAGTATCCACCCAGCTGTCCACTATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACTATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAACACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCGG
CCATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTAGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATTGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACTAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGATACCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTGT
TTAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment