Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   D2E16_RS10385 Genome accession   NZ_CP032064
Coordinates   2130760..2132550 (-) Length   596 a.a.
NCBI ID   WP_029187517.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125760..2137550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS10360 (D2E16_10675) - 2126080..2126445 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  D2E16_RS10365 (D2E16_10680) - 2126568..2127470 (-) 903 WP_002942329.1 ABC transporter permease -
  D2E16_RS10370 (D2E16_10685) opp4B 2127484..2128440 (-) 957 WP_002942327.1 oligopeptide ABC transporter permease -
  D2E16_RS10375 (D2E16_10690) - 2128442..2129383 (-) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  D2E16_RS10380 (D2E16_10695) - 2129386..2130384 (-) 999 WP_024379505.1 ABC transporter ATP-binding protein -
  D2E16_RS10385 (D2E16_10700) oppA 2130760..2132550 (-) 1791 WP_029187517.1 oligopeptide ABC transporter substrate-binding protein Regulator
  D2E16_RS10390 (D2E16_10705) pbp3 2132765..2134006 (+) 1242 WP_192369213.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  D2E16_RS10395 (D2E16_10710) sufB 2134243..2135658 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  D2E16_RS10400 (D2E16_10715) sufU 2135847..2136287 (-) 441 WP_192369212.1 Fe-S cluster assembly sulfur transfer protein SufU -
  D2E16_RS10405 (D2E16_10720) - 2136274..2137500 (-) 1227 WP_225620738.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65588.39 Da        Isoelectric Point: 4.4943

>NTDB_id=313548 D2E16_RS10385 WP_029187517.1 2130760..2132550(-) (oppA) [Streptococcus suis strain YSJ17]
MKKTTKLFALAGISLLSTAVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=313548 D2E16_RS10385 WP_029187517.1 2130760..2132550(-) (oppA) [Streptococcus suis strain YSJ17]
ATGAAAAAGACAACAAAACTCTTTGCTTTAGCAGGAATTTCTCTGCTGTCGACAGCAGTTCTTGCTGCTTGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAACACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGACGATAAATTCTTGAAC
ATTGTGGGTATGGATGAATTTGTTGCTGGAACAGCTTCAGATATCTCAGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACGGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.289

100

0.933

Multiple sequence alignment