Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   D2E16_RS10325 Genome accession   NZ_CP032064
Coordinates   2120076..2120810 (-) Length   244 a.a.
NCBI ID   WP_192369215.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2115076..2125810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS10295 (D2E16_10605) rnpM 2115290..2115586 (-) 297 WP_029177377.1 RNase P modulator RnpM -
  D2E16_RS10300 (D2E16_10610) nusA 2115603..2116757 (-) 1155 WP_024418497.1 transcription termination factor NusA -
  D2E16_RS10305 (D2E16_10615) rimP 2116831..2117301 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  D2E16_RS10310 (D2E16_10620) trmB 2117560..2118198 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  D2E16_RS10315 (D2E16_10625) ccrZ 2118195..2118989 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  D2E16_RS10320 (D2E16_10630) - 2119039..2120079 (-) 1041 WP_192369216.1 ABC transporter permease -
  D2E16_RS10325 (D2E16_10635) pptA 2120076..2120810 (-) 735 WP_192369215.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS10330 (D2E16_10640) - 2120873..2121286 (+) 414 WP_192369214.1 HIT family protein -
  D2E16_RS10335 (D2E16_10645) - 2121288..2121617 (+) 330 WP_029173487.1 hypothetical protein -
  D2E16_RS10340 (D2E16_10655) - 2122162..2123355 (-) 1194 WP_099831139.1 LCP family protein -
  D2E16_RS10345 (D2E16_10660) - 2123352..2123879 (-) 528 WP_024376436.1 GNAT family N-acetyltransferase -
  D2E16_RS10350 (D2E16_10665) tsaE 2123872..2124312 (-) 441 WP_029173484.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26846.17 Da        Isoelectric Point: 4.4201

>NTDB_id=313547 D2E16_RS10325 WP_192369215.1 2120076..2120810(-) (pptA) [Streptococcus suis strain YSJ17]
MLEVKNVTGGYVNIPVLKDVSFTVEDGKLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRIEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=313547 D2E16_RS10325 WP_192369215.1 2120076..2120810(-) (pptA) [Streptococcus suis strain YSJ17]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TAAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCTTGGGA
GCAAGCTTGGGGACGTATTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment