Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   D2E16_RS09540 Genome accession   NZ_CP032064
Coordinates   1953456..1955231 (-) Length   591 a.a.
NCBI ID   WP_192370223.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1952448..1953401 1953456..1955231 flank 55


Gene organization within MGE regions


Location: 1952448..1955231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS09535 (D2E16_09820) - 1952448..1953401 (+) 954 WP_024376800.1 IS30 family transposase -
  D2E16_RS09540 (D2E16_09825) oppA 1953456..1955231 (-) 1776 WP_192370223.1 oligopeptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65455.22 Da        Isoelectric Point: 4.2948

>NTDB_id=313544 D2E16_RS09540 WP_192370223.1 1953456..1955231(-) (oppA) [Streptococcus suis strain YSJ17]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTCKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTTKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=313544 D2E16_RS09540 WP_192370223.1 1953456..1955231(-) (oppA) [Streptococcus suis strain YSJ17]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAAGACGAGTGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGGACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACATGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATTGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAAGTTGATGACTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGTGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGACAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTATTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTTAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGCTATAATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGATGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCAGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCCATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGATGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658

Multiple sequence alignment