Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   D2E16_RS07755 Genome accession   NZ_CP032064
Coordinates   1604599..1605438 (-) Length   279 a.a.
NCBI ID   WP_192369021.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1599599..1610438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS07745 (D2E16_07995) - 1601835..1602356 (-) 522 WP_192369029.1 GNAT family N-acetyltransferase -
  D2E16_RS07750 (D2E16_08000) pheS 1603141..1604184 (-) 1044 WP_024398214.1 phenylalanine--tRNA ligase subunit alpha -
  D2E16_RS07755 (D2E16_08005) endA 1604599..1605438 (-) 840 WP_192369021.1 DNA/RNA non-specific endonuclease Machinery gene
  D2E16_RS07760 (D2E16_08010) - 1605468..1605659 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  D2E16_RS07765 (D2E16_08015) murA 1605652..1606935 (-) 1284 WP_192369020.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  D2E16_RS07770 (D2E16_08020) - 1606959..1607183 (-) 225 WP_029176956.1 DUF1146 family protein -
  D2E16_RS07775 (D2E16_08025) - 1607243..1607659 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  D2E16_RS07780 (D2E16_08030) atpD 1607669..1609075 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  D2E16_RS07785 (D2E16_08035) - 1609095..1609973 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30154.42 Da        Isoelectric Point: 6.6536

>NTDB_id=313531 D2E16_RS07755 WP_192369021.1 1604599..1605438(-) (endA) [Streptococcus suis strain YSJ17]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=313531 D2E16_RS07755 WP_192369021.1 1604599..1605438(-) (endA) [Streptococcus suis strain YSJ17]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCAACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGGGCT
GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGCAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGTTCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

74.153

84.588

0.627
  endA Streptococcus pneumoniae D39

74.153

84.588

0.627
  endA Streptococcus pneumoniae R6

74.153

84.588

0.627
  endA Streptococcus pneumoniae TIGR4

74.153

84.588

0.627

Multiple sequence alignment