Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   D2E16_RS04525 Genome accession   NZ_CP032064
Coordinates   951330..951623 (+) Length   97 a.a.
NCBI ID   WP_024376325.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946330..956623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS04510 (D2E16_04625) hemW 948799..949935 (+) 1137 WP_192370070.1 radical SAM family heme chaperone HemW -
  D2E16_RS04515 (D2E16_04630) - 949951..950691 (+) 741 WP_192370073.1 acyl-ACP thioesterase domain-containing protein -
  D2E16_RS04520 (D2E16_04635) - 950975..951340 (+) 366 WP_024376324.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D2E16_RS04525 (D2E16_04640) HI0659 951330..951623 (+) 294 WP_024376325.1 helix-turn-helix domain-containing protein Machinery gene
  D2E16_RS04530 (D2E16_04645) - 951670..952155 (+) 486 Protein_851 hypothetical protein -
  D2E16_RS04535 (D2E16_04650) - 953014..953919 (+) 906 WP_192370075.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10776.54 Da        Isoelectric Point: 6.3732

>NTDB_id=313526 D2E16_RS04525 WP_024376325.1 951330..951623(+) (HI0659) [Streptococcus suis strain YSJ17]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIKARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEYEQV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=313526 D2E16_RS04525 WP_024376325.1 951330..951623(+) (HI0659) [Streptococcus suis strain YSJ17]
ATGAAAAATAACGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAAGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGTGAGCTTATCAAGGCTAGAAATGAAAAGGGCATTAGTCAGAAGAAACTAGAGGAGATGA
GCGGTGTTAGTCAGCCAGTTATCGCTAGAATGGAAACAGGAAAGACAAGCCCACAACTTGATACAGTTTTAAAAGTATTG
GCAAGTCTTGGTAAGACCTTAGCCGTTGTACCATTAGAGTATGAGCAGGTTTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

93.814

0.536

Multiple sequence alignment