Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   D2E16_RS01260 Genome accession   NZ_CP032064
Coordinates   245409..246122 (+) Length   237 a.a.
NCBI ID   WP_104929945.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 240409..251122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS01250 (D2E16_01285) treC 241151..242776 (-) 1626 WP_192370177.1 alpha,alpha-phosphotrehalase -
  D2E16_RS01255 (D2E16_01300) treP 243181..245175 (-) 1995 WP_192370174.1 PTS system trehalose-specific EIIBC component -
  D2E16_RS01260 (D2E16_01305) treR 245409..246122 (+) 714 WP_104929945.1 trehalose operon repressor Regulator
  D2E16_RS01265 (D2E16_01310) - 246180..246491 (+) 312 WP_029177093.1 hypothetical protein -
  D2E16_RS01270 (D2E16_01315) - 246488..247036 (+) 549 WP_192370172.1 CvpA family protein -
  D2E16_RS01275 (D2E16_01320) - 247193..249526 (+) 2334 WP_192370169.1 endonuclease MutS2 -
  D2E16_RS01280 (D2E16_01325) - 249648..251024 (+) 1377 WP_194472478.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27240.13 Da        Isoelectric Point: 6.7419

>NTDB_id=313515 D2E16_RS01260 WP_104929945.1 245409..246122(+) (treR) [Streptococcus suis strain YSJ17]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=313515 D2E16_RS01260 WP_104929945.1 245409..246122(+) (treR) [Streptococcus suis strain YSJ17]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511

Multiple sequence alignment