Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DYJ25_RS00980 Genome accession   NZ_CP032056
Coordinates   232719..234119 (-) Length   466 a.a.
NCBI ID   WP_118865701.1    Uniprot ID   -
Organism   Prevotella denticola strain KCOM 1525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 227719..239119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYJ25_RS00960 (DYJ25_00960) - 228529..230196 (+) 1668 WP_036857037.1 formate--tetrahydrofolate ligase -
  DYJ25_RS00965 (DYJ25_00965) - 230231..231013 (-) 783 WP_118865699.1 glycoside hydrolase family 25 protein -
  DYJ25_RS00970 (DYJ25_00970) - 231448..231828 (+) 381 WP_013671295.1 hypothetical protein -
  DYJ25_RS00975 (DYJ25_00975) - 231980..232660 (+) 681 WP_118865700.1 GDSL-type esterase/lipase family protein -
  DYJ25_RS00980 (DYJ25_00980) radA 232719..234119 (-) 1401 WP_118865701.1 DNA repair protein RadA Machinery gene
  DYJ25_RS00985 (DYJ25_00985) - 234183..235136 (+) 954 WP_118865702.1 ABC transporter substrate-binding protein -
  DYJ25_RS00990 (DYJ25_00990) - 235133..237322 (+) 2190 WP_205421640.1 M48 family metallopeptidase -
  DYJ25_RS00995 (DYJ25_00995) - 237681..237878 (-) 198 WP_004352226.1 hypothetical protein -
  DYJ25_RS01000 (DYJ25_01000) - 237948..238730 (-) 783 WP_118865703.1 YaaA family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50782.20 Da        Isoelectric Point: 6.6865

>NTDB_id=313446 DYJ25_RS00980 WP_118865701.1 232719..234119(-) (radA) [Prevotella denticola strain KCOM 1525]
MAKDKIAYVCSNCGQESAKWIGKCPNCGQWNTFKEIRIAADTGSQAARHAATTLRNAASGEAVSALANKPQRLRDVSSHD
EPRIDMHDGELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQHVLYVSGEESPHQIKMRAVRITKDIAENIIIL
SETSLERIFEHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVILIGHINKEGSIAGPKILE
HIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMGQQGLRQVSNPSELLLTEDHDGLSGVAISSTIEGVRPFLVET
QALVSSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGW
CMCGEVGLSGEVRPVSRIEQRIAEAEKLGFSHIILPKYNLSGLAGKYSIQLHPVRKVEEALRNLFG

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=313446 DYJ25_RS00980 WP_118865701.1 232719..234119(-) (radA) [Prevotella denticola strain KCOM 1525]
ATGGCAAAGGACAAGATAGCTTATGTCTGCAGTAACTGCGGGCAGGAAAGTGCAAAATGGATTGGCAAATGTCCCAACTG
CGGACAATGGAATACGTTCAAGGAAATCCGCATCGCTGCCGATACGGGCTCACAGGCAGCCCGCCATGCAGCCACGACAC
TGCGTAATGCAGCTTCGGGCGAAGCGGTTTCAGCTTTGGCGAACAAGCCGCAGCGGCTGCGTGATGTATCTTCACATGAC
GAACCACGGATAGATATGCACGATGGAGAGCTGAACAGGGTACTGGGAGGCGGACTGGTACCGGGCAGCATCGTACTCTT
GGGCGGTGAGCCTGGTATTGGGAAAAGTACGCTGACTCTCCAGACGATTCTCCACATGACGCAGCATGTACTCTACGTCA
GCGGTGAGGAAAGCCCTCATCAGATTAAGATGCGCGCCGTGCGCATCACAAAGGATATTGCCGAAAACATCATCATCCTG
TCGGAGACATCTTTGGAAAGAATCTTCGAACACATCCGTGACGTTCAGCCAGAGCTTGTCGTCATAGACTCTATCCAGAC
CATTTCAACGGAGGACGTGGACAGCAGCCCAGGCAGCATCACACAGGTACGTGAATGCGCATCGGCGCTGTTACGCTTTG
CCAAGACGAGTGGCGTCCCCGTGATACTCATCGGCCACATCAACAAAGAAGGCAGCATCGCCGGTCCGAAGATTCTGGAA
CATATCGTTGATACCGTCATTCAATTTGAGGGAGACCAACATTATATGTACCGTATACTCCGCAGCATAAAAAACCGCTT
CGGATCTACTTCGGAATTAGGCATCTACGAAATGGGGCAGCAGGGACTGCGACAGGTAAGCAATCCATCGGAGCTTCTGC
TCACAGAAGACCATGACGGACTGTCGGGTGTAGCAATTTCAAGTACTATTGAAGGTGTACGTCCTTTTCTTGTTGAAACA
CAAGCACTTGTTTCCTCTGCAGCTTATGGGACTCCACAACGTTCTGCAACAGGATTCGACCAACGCAGACTGAACATGCT
GCTTGCCGTGCTGGAGAAGCGGGTGGGCTTCAAACTCATGCAGAAGGATGTGTTTCTGAACATTGCCGGCGGTCTCCGTG
TAACAGACATGGCCATGGACTTAAGTGTCATTGCCGCCGTACTTTCATCGAATGTCGACACACCGATAGAACAGGGATGG
TGTATGTGCGGAGAGGTCGGCCTCAGCGGCGAAGTGCGACCGGTCAGCCGGATTGAACAGCGCATTGCTGAAGCCGAGAA
ACTCGGTTTCAGTCATATCATCCTCCCCAAGTACAACTTATCGGGACTTGCAGGCAAATACAGCATACAGCTTCACCCTG
TACGCAAGGTGGAAGAAGCACTCCGCAATCTCTTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-439)

AAA domain (AAA_25)

(85-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.491
  radA Streptococcus mitis SK321

45.396

100

0.455
  radA Streptococcus mitis NCTC 12261

45.396

100

0.455
  radA Streptococcus pneumoniae Rx1

45.396

100

0.455
  radA Streptococcus pneumoniae D39

45.396

100

0.455
  radA Streptococcus pneumoniae R6

45.396

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.396

100

0.455

Multiple sequence alignment