Detailed information NTG0313408

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E3160_RS21260
• Genome accession: NZ_CP038374
• Coordinates: 4325347..4326339 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081565.1
• Uniprot ID: -
• Organism: Escherichia coli O157:H7 strain F3113
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4320347..4331339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3160_RS21235 (E3160_21845)	pphB	4321709..4322365 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
E3160_RS21240 (E3160_21850)	-	4322406..4322642 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E3160_RS21245 (E3160_21855)	-	4322653..4324080 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E3160_RS21250 (E3160_21860)	-	4324080..4324673 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E3160_RS21255 (E3160_21865)	-	4324820..4325227 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
E3160_RS21260 (E3160_21870)	rpoS	4325347..4326339 (-)	993	WP_000081565.1	RNA polymerase sigma factor RpoS	Regulator
E3160_RS21265 (E3160_21875)	nlpD	4326402..4327496 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
E3160_RS21270 (E3160_21880)	pcm	4327681..4328307 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E3160_RS21275 (E3160_21885)	surE	4328301..4329062 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E3160_RS21280 (E3160_21890)	truD	4329043..4330092 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
E3160_RS21285 (E3160_21895)	ispF	4330089..4330568 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E3160_RS21290 (E3160_21900)	ispD	4330568..4331278 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.80 Da
• Isoelectric Point: 4.5229

>NTDB_id=313408 E3160_RS21260 WP_000081565.1 4325347..4326339(-) (rpoS) [Escherichia coli O157:H7 strain F3113]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHQLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=313408 E3160_RS21260 WP_000081565.1 4325347..4326339(-) (rpoS) [Escherichia coli O157:H7 strain F3113]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TCAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715