Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E3160_RS06125 Genome accession   NZ_CP038374
Coordinates   1332105..1332710 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157:H7 strain F3113     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327105..1337710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3160_RS06095 (E3160_06195) rsmS 1327807..1327971 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  E3160_RS06100 (E3160_06200) priC 1327985..1328512 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  E3160_RS06105 (E3160_06205) ybaN 1328582..1328959 (+) 378 WP_001188905.1 DUF454 family protein -
  E3160_RS06110 (E3160_06210) apt 1329112..1329663 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  E3160_RS06115 (E3160_06215) dnaX 1329792..1331723 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  E3160_RS06120 (E3160_06220) ybaB 1331776..1332105 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E3160_RS06125 (E3160_06225) recR 1332105..1332710 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E3160_RS06130 (E3160_06230) htpG 1332820..1334694 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  E3160_RS06135 (E3160_06235) adk 1334849..1335493 (+) 645 WP_001220233.1 adenylate kinase -
  E3160_RS06140 (E3160_06240) hemH 1335625..1336587 (+) 963 WP_001250105.1 ferrochelatase -
  E3160_RS06145 (E3160_06245) aes 1336584..1337543 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=313375 E3160_RS06125 WP_001195025.1 1332105..1332710(+) (recR) [Escherichia coli O157:H7 strain F3113]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=313375 E3160_RS06125 WP_001195025.1 1332105..1332710(+) (recR) [Escherichia coli O157:H7 strain F3113]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443