Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D1013_RS19910 Genome accession   NZ_CP032050
Coordinates   4631489..4632850 (+) Length   453 a.a.
NCBI ID   WP_121850489.1    Uniprot ID   A0A3G2LBB5
Organism   Euzebyella marina strain RN62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4626489..4637850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1013_RS19890 (D1013_19890) panD 4626522..4626872 (+) 351 WP_121850485.1 aspartate 1-decarboxylase -
  D1013_RS19895 (D1013_19895) - 4626876..4627841 (+) 966 WP_121850486.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  D1013_RS19900 (D1013_19900) - 4627856..4628998 (+) 1143 WP_121850487.1 alpha/beta hydrolase -
  D1013_RS19905 (D1013_19905) - 4629175..4631397 (+) 2223 WP_162987957.1 polysaccharide lyase family 8 super-sandwich domain-containing protein -
  D1013_RS19910 (D1013_19910) radA 4631489..4632850 (+) 1362 WP_121850489.1 DNA repair protein RadA Machinery gene
  D1013_RS19915 (D1013_19915) - 4632948..4633988 (-) 1041 WP_121850490.1 NADP(H)-dependent aldo-keto reductase -
  D1013_RS19920 (D1013_19920) - 4634064..4634828 (-) 765 WP_121850491.1 exodeoxyribonuclease III -
  D1013_RS19925 (D1013_19925) - 4634981..4637053 (+) 2073 WP_121850492.1 TonB-dependent receptor domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49872.38 Da        Isoelectric Point: 7.5946

>NTDB_id=313346 D1013_RS19910 WP_121850489.1 4631489..4632850(+) (radA) [Euzebyella marina strain RN62]
MPKTKTAYFCQNCGAQYSKWVGQCSSCKQWNTVVEELVQKEEKQSWKTTSNTAKKVSKPLRVNEISTDKELRLNTFDLEF
NRVLGGGLVPGALVLLGGEPGVGKSTLLLQIALKLPYRTLYVSGEESQKQIKMRADRIHPDSENCYILTETKTQNIFRQI
EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELMKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGAGLREVNNPSEILISKNEEKLSGTAIASTIEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIPIEKGVCFAAEVGLAGEI
RPVQRVDQRILEAEKLGFTSIYVSKNNKISLKNTKIAVHKAARIEDVVGDLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=313346 D1013_RS19910 WP_121850489.1 4631489..4632850(+) (radA) [Euzebyella marina strain RN62]
ATGCCCAAAACAAAAACCGCTTATTTCTGTCAAAATTGTGGTGCCCAGTACTCCAAGTGGGTCGGTCAATGTAGTTCTTG
CAAACAATGGAATACAGTTGTAGAAGAGTTAGTTCAGAAGGAGGAAAAGCAAAGTTGGAAAACTACTTCGAACACCGCCA
AAAAAGTTTCTAAACCCCTTCGTGTAAATGAAATTAGCACCGATAAGGAACTGAGGTTAAATACTTTTGACCTTGAGTTC
AACAGGGTTCTAGGCGGAGGTTTGGTTCCTGGTGCTTTGGTGCTATTGGGTGGCGAACCTGGTGTTGGAAAAAGTACATT
ATTACTGCAAATCGCTTTAAAACTACCCTATAGAACATTGTACGTTTCGGGGGAGGAAAGCCAAAAGCAGATAAAAATGC
GTGCTGACCGCATACACCCCGATAGCGAGAATTGTTATATTCTGACCGAGACAAAAACACAGAACATTTTTCGCCAAATA
GAAGCCACGGAACCTGATATTGTGGTAATCGATTCCATTCAAACCTTACACTCCGATTATATAGAATCTGCCGCCGGAAG
TATTTCTCAAATTAGGGAATGTACCGCCGAACTGATGAAATTTGCCAAAGAAACGAATACCCCGGTCATTTTGATCGGTC
ATATCACCAAAGACGGATCAATAGCCGGCCCTAAGATATTGGAGCATATGGTAGACACGGTTCTACAGTTCGAGGGAGAC
AGAAATTACGTCTACAGAATTTTGCGGTCTTTAAAAAATAGATTTGGATCTACCGCAGAACTTGGTATTTACGAAATGCA
GGGCGCTGGCCTTCGAGAGGTCAATAACCCTTCTGAAATATTGATCTCAAAAAACGAAGAGAAACTAAGTGGTACGGCAA
TCGCTTCTACTATCGAGGGTATGCGGCCATTAATGATAGAAATACAGGCATTAGTCAGCACTGCAGTTTATGGCACCCCG
CAAAGGTCGACTACTGGCTACAACGCAAAAAGACTTAATATGCTTCTGGCCGTCTTGGAAAAAAGGGCCGGTTTTAAACT
GGGGGCGAAAGACGTCTTCTTGAACATTACAGGTGGAATATCTGTTGACGACCCCGCTATTGACCTTGCCGTAATTGCCG
CCATACTCTCAAGCAATGAAGATATTCCAATTGAAAAGGGAGTCTGTTTTGCCGCCGAAGTAGGTCTGGCAGGAGAAATA
AGGCCCGTACAACGAGTTGACCAACGAATCTTGGAAGCTGAAAAATTGGGCTTCACCTCGATCTACGTATCAAAAAACAA
TAAGATTAGTTTAAAGAATACAAAAATAGCCGTTCACAAAGCTGCTAGAATCGAAGATGTTGTTGGCGATTTATTCGGCT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

AAA domain (AAA_25)

(83-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2LBB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.132

100

0.483
  radA Streptococcus mitis NCTC 12261

48.132

100

0.483
  radA Streptococcus pneumoniae Rx1

48.132

100

0.483
  radA Streptococcus pneumoniae R6

48.132

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.483
  radA Streptococcus mitis SK321

47.912

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

94.923

0.47

Multiple sequence alignment