Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7S14_RS08525 Genome accession   NZ_CP032009
Coordinates   1858364..1859740 (-) Length   458 a.a.
NCBI ID   WP_059490088.1    Uniprot ID   -
Organism   Burkholderia cepacia strain 39628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1853364..1864740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S14_RS08505 (C7S14_5335) cls 1853698..1855137 (+) 1440 WP_021159091.1 cardiolipin synthase -
  C7S14_RS08510 (C7S14_5336) - 1855198..1855677 (-) 480 WP_021159090.1 glutathione peroxidase -
  C7S14_RS08515 (C7S14_5337) - 1855814..1857745 (+) 1932 WP_042974800.1 ATP-binding cassette domain-containing protein -
  C7S14_RS08520 (C7S14_5338) - 1857951..1858217 (-) 267 WP_021159088.1 DUF2866 domain-containing protein -
  C7S14_RS08525 (C7S14_5339) radA 1858364..1859740 (-) 1377 WP_059490088.1 DNA repair protein RadA Machinery gene
  C7S14_RS08530 (C7S14_5340) alr 1859752..1860822 (-) 1071 WP_021159086.1 alanine racemase -
  C7S14_RS08535 (C7S14_5341) lplT 1861041..1862348 (+) 1308 WP_059708137.1 lysophospholipid transporter LplT -
  C7S14_RS08540 (C7S14_5342) thiD 1862407..1863216 (+) 810 WP_059708138.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C7S14_RS08545 (C7S14_5343) - 1863235..1864200 (-) 966 WP_021159083.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48893.30 Da        Isoelectric Point: 6.7607

>NTDB_id=313323 C7S14_RS08525 WP_059490088.1 1858364..1859740(-) (radA) [Burkholderia cepacia strain 39628]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPEAPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=313323 C7S14_RS08525 WP_059490088.1 1858364..1859740(-) (radA) [Burkholderia cepacia strain 39628]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAGGCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCCAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCCGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGACCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTTGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGACGAACTGAAGCTGCTCGCGGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACGGAGCGCGGGCTGCGCGGCGTCGCGAATCCATCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCTGCGCTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis SK321

47.38

100

0.474
  radA Streptococcus mitis NCTC 12261

47.046

99.782

0.469

Multiple sequence alignment