Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Ahae11616_RS14915 Genome accession   NZ_CP032002
Coordinates   3099138..3099464 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094138..3104464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS14895 (Ahae11616_15000) - 3094442..3095050 (-) 609 WP_035374895.1 FHA domain-containing protein -
  Ahae11616_RS14900 (Ahae11616_15005) gspD 3095129..3097339 (-) 2211 WP_005087946.1 type II secretion system secretin GspD -
  Ahae11616_RS14905 (Ahae11616_15010) - 3097381..3098220 (-) 840 WP_005087945.1 type II secretion system protein N -
  Ahae11616_RS14910 (Ahae11616_15015) gspN 3098220..3098963 (-) 744 WP_026056326.1 type II secretion system protein N -
  Ahae11616_RS14915 (Ahae11616_15020) hns 3099138..3099464 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  Ahae11616_RS14920 (Ahae11616_15025) - 3099895..3100326 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  Ahae11616_RS14925 (Ahae11616_15030) - 3100335..3101528 (-) 1194 WP_008942265.1 hypothetical protein -
  Ahae11616_RS14930 (Ahae11616_15035) - 3101534..3102361 (-) 828 WP_008942264.1 hypothetical protein -
  Ahae11616_RS14935 (Ahae11616_15040) - 3102358..3103134 (-) 777 WP_005087939.1 uroporphyrinogen-III synthase -
  Ahae11616_RS14940 (Ahae11616_15045) hemC 3103134..3104051 (-) 918 WP_005087936.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=313308 Ahae11616_RS14915 WP_004637627.1 3099138..3099464(-) (hns) [Acinetobacter haemolyticus strain 11616]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=313308 Ahae11616_RS14915 WP_004637627.1 3099138..3099464(-) (hns) [Acinetobacter haemolyticus strain 11616]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment