Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Ahae11616_RS14395 Genome accession   NZ_CP032002
Coordinates   2979908..2982133 (+) Length   741 a.a.
NCBI ID   WP_160124294.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2974908..2987133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS14375 (Ahae11616_14475) lnt 2975735..2977294 (+) 1560 WP_005088063.1 apolipoprotein N-acyltransferase -
  Ahae11616_RS14380 (Ahae11616_14480) - 2977416..2977760 (-) 345 WP_005088060.1 hypothetical protein -
  Ahae11616_RS14385 (Ahae11616_14485) gspG 2978024..2978554 (-) 531 WP_005088059.1 type II secretion system major pseudopilin GspG -
  Ahae11616_RS14390 (Ahae11616_14490) gspF 2978554..2979759 (-) 1206 WP_005083777.1 type II secretion system inner membrane protein GspF -
  Ahae11616_RS14395 (Ahae11616_14495) priA 2979908..2982133 (+) 2226 WP_160124294.1 primosomal protein N' Machinery gene
  Ahae11616_RS14400 (Ahae11616_14500) - 2982174..2983991 (+) 1818 WP_005088050.1 cation:proton antiporter -
  Ahae11616_RS14405 (Ahae11616_14505) - 2984100..2984972 (+) 873 WP_005083783.1 Hsp33 family molecular chaperone HslO -
  Ahae11616_RS14410 (Ahae11616_14510) - 2985082..2985432 (-) 351 WP_004637729.1 hypothetical protein -
  Ahae11616_RS14415 (Ahae11616_14515) - 2985596..2986555 (+) 960 WP_004637728.1 DnaJ C-terminal domain-containing protein -
  Ahae11616_RS14420 (Ahae11616_14520) - 2986567..2986893 (+) 327 WP_004637727.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84240.23 Da        Isoelectric Point: 8.6567

>NTDB_id=313305 Ahae11616_RS14395 WP_160124294.1 2979908..2982133(+) (priA) [Acinetobacter haemolyticus strain 11616]
MPSENSNAILYRIRVALPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNEVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSQKQYDAYQILKIHPHG
TTENVLNLSGVGTATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLVRVESKDREYSQNFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=313305 Ahae11616_RS14395 WP_160124294.1 2979908..2982133(+) (priA) [Acinetobacter haemolyticus strain 11616]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCCTACCCGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTGTCGTTCGGACGACAAAATCTCGTAG
GTATCATTGTTGAAAAAATTGATCCCAATGAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCCCAGTACTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTTCCCACACTACTCAGGCAAGGACGTGCATTAGACATTTTATTTCATCTGTGGAAAATCGTGCCAA
ATGATGATCCGAATGCATTATTGAAGCGCTCACAAAAACAATATGATGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACAACCGAAAATGTCTTGAACCTCAGTGGTGTTGGAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAATG
TTGTCTGGAACCGCATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTCACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCAGAAATCGGCCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGGTTTCATTGTGATATTGCTTTATTACACTCAGGGTTAAATGACTCGAAGC
GCTTACAAGCCTGGCAGCATGCACAAACAGGGAAAGCGTCCATTGTGATCGGGACCCGTTCTGCGATCTACACGCCACTT
CCTCATCTTGGACTGATTATCCTTGATGAAGAGCATGATCTTTCATATAAGCAGCAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCACTCTACAGAGGATACTTACAACACTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGCGTCGCTGTCCTGCCTAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGTTATGCACCGATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCATTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCCGATCATTGCCCAGCATGCCAAAAACAAAGTTTAAAAACGATTGGCGCTGGAACGGCAAAACTTGAAGAGCA
TTTACAAGAGTTATTTCCTCACAATGAAGTGATTCGAGTTGATCGTGACAGTACCAGCCGTGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGACATCATTTCCCACAT
GTAACTTTGGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACCGCACAATT
AATAGTACAAGTGGCCGGACGCGCTGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGATCATC
CTATGCTCACCACATTAATTGAACATGACTATCGTACGGTTGCCAAACAAATGCTGGCTGAGCGTAAACTTGCAATGCTC
CCTCCATATCGTTATACAGTATTGGTACGTGTTGAATCGAAAGATCGAGAATATAGCCAGAACTTTTTGGCGGATATTGC
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGGCCAATTCCCGCACCGATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.313

99.19

0.816

Multiple sequence alignment