Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Ahae11616_RS09530 Genome accession   NZ_CP032002
Coordinates   1976509..1977462 (-) Length   317 a.a.
NCBI ID   WP_005081107.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1971509..1982462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS09505 (Ahae11616_09600) - 1971557..1972348 (-) 792 WP_198421055.1 DUF4198 domain-containing protein -
  Ahae11616_RS09510 (Ahae11616_09605) - 1972579..1973799 (+) 1221 WP_118902453.1 MFS transporter -
  Ahae11616_RS09515 (Ahae11616_09610) - 1973845..1974795 (-) 951 WP_005081100.1 siderophore ABC transporter substrate-binding protein -
  Ahae11616_RS09520 (Ahae11616_09615) - 1974805..1975569 (-) 765 WP_005081102.1 ABC transporter ATP-binding protein -
  Ahae11616_RS09525 (Ahae11616_09620) - 1975560..1976516 (-) 957 WP_005081105.1 iron chelate uptake ABC transporter family permease subunit -
  Ahae11616_RS09530 (Ahae11616_09625) ceuB 1976509..1977462 (-) 954 WP_005081107.1 ABC transporter permease Machinery gene
  Ahae11616_RS09535 (Ahae11616_09630) - 1977781..1978398 (-) 618 WP_005081110.1 LysE family translocator -
  Ahae11616_RS09540 (Ahae11616_09635) - 1978489..1979463 (-) 975 WP_004638650.1 ion transporter -
  Ahae11616_RS09545 (Ahae11616_09640) - 1979752..1980780 (+) 1029 WP_080591915.1 transposase -
  Ahae11616_RS09550 (Ahae11616_09645) - 1980839..1982296 (+) 1458 WP_005081113.1 DASS family sodium-coupled anion symporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34487.64 Da        Isoelectric Point: 9.6461

>NTDB_id=313299 Ahae11616_RS09530 WP_005081107.1 1976509..1977462(-) (ceuB) [Acinetobacter haemolyticus strain 11616]
MIKRRYLLVLLIPLALISLFVGVGDMSLAGLIAGNPQDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPSASIFAKTGFAIIVTLIGAMTFMSILATLKHRDTVFVLLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSIPVLALIYIFANRFVLAGLGEDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDHIRKTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGVVGSVIFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=313299 Ahae11616_RS09530 WP_005081107.1 1976509..1977462(-) (ceuB) [Acinetobacter haemolyticus strain 11616]
ATGATTAAACGGCGCTATTTATTGGTTTTACTCATACCTTTGGCATTGATTTCCTTGTTTGTTGGTGTTGGGGATATGAG
CCTTGCTGGATTGATTGCAGGCAATCCACAAGATTGGCAACTCTTTTGGACGAGTCGATTACCACGCCTGATGGCGATTG
TTGTTGCAGGTGCTGGGTTAAGTGTCTGCGGTTTAATTATGCAGTCATTAAGTCGAAATCGCTTTGTTTCACCAACCACA
GCGGGTTTATATGACTGTGCACGGCTGGGCGTTTTGATTTCGATTATTTTGCTTCCAAGTGCTTCTATTTTTGCCAAAAC
TGGATTTGCGATTATTGTCACGCTGATTGGTGCGATGACATTTATGAGTATTCTTGCCACTTTAAAGCACCGAGATACGG
TGTTTGTGCTACTCGTTGGGATGATTTTTGGCAGCATTATTTCAGCATTTACGACTTTTATTGCTTTGCAACTTGATTTG
TTGCAGAACTTAGCAGGGTGGTTGCAAGGGGATTTCTCAACCATTTTGAATGGTCAATATGAATTGATTTATTTAAGTAT
TCCCGTTCTTGCCTTGATTTATATATTTGCCAATCGTTTTGTCTTGGCAGGCTTGGGTGAAGACTTTGCGACAAATCTAG
GTTTGAACTATAAACAGACACTTTTCTTAGGTTTGCTGCTGGTCTCAGTAATTACTGGTGTAGTGATTGTGACTGTCGGC
GCAATTCCTTTTCTCGGTTTAATTGTACCAAATCTAGTCAGCCTTTATTTAGGCGATCATATTCGCAAAACGCTTTCACA
TACGGCATTGCTTGGTGCGTTGCTGGTCTTACTGTGTGATGTTTTTGGTCGAGTGGTGATTTATCCCTATGAGGTTTCGG
TCAGCCTGATTATGGGGGTGGTTGGTAGTGTGATTTTCCTGTGGTTATTACTCAGGAGATATCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.201

98.738

0.486

Multiple sequence alignment