Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Ahae2126ch_RS15290 Genome accession   NZ_CP031991
Coordinates   3163877..3164203 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 2126ch     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3164637..3165506 3163877..3164203 flank 434


Gene organization within MGE regions


Location: 3163877..3165506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae2126ch_RS15290 (Ahae2126ch_15450) hns 3163877..3164203 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  Ahae2126ch_RS15295 (Ahae2126ch_15455) - 3164437..3164517 (-) 81 Protein_2991 IS1 family transposase -
  Ahae2126ch_RS15300 (Ahae2126ch_15460) - 3164574..3165506 (+) 933 WP_035374992.1 IS5-like element ISAba12 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=313228 Ahae2126ch_RS15290 WP_004637627.1 3163877..3164203(-) (hns) [Acinetobacter haemolyticus strain 2126ch]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=313228 Ahae2126ch_RS15290 WP_004637627.1 3163877..3164203(-) (hns) [Acinetobacter haemolyticus strain 2126ch]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment