Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Ahae5227_RS15795 Genome accession   NZ_CP031988
Coordinates   3281863..3282189 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 5227     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3276863..3287189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS15775 (Ahae5227_15945) - 3277173..3277781 (-) 609 WP_026056327.1 FHA domain-containing protein -
  Ahae5227_RS15780 (Ahae5227_15950) gspD 3277860..3280067 (-) 2208 WP_008942267.1 type II secretion system secretin GspD -
  Ahae5227_RS15785 (Ahae5227_15955) - 3280109..3280945 (-) 837 WP_004637629.1 type II secretion system protein N -
  Ahae5227_RS15790 (Ahae5227_15960) gspN 3280945..3281688 (-) 744 WP_026056326.1 type II secretion system protein N -
  Ahae5227_RS15795 (Ahae5227_15965) hns 3281863..3282189 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  Ahae5227_RS15800 (Ahae5227_15970) - 3282620..3283051 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  Ahae5227_RS15805 (Ahae5227_15975) - 3283060..3284253 (-) 1194 WP_008942265.1 hypothetical protein -
  Ahae5227_RS15810 (Ahae5227_15980) - 3284259..3285086 (-) 828 WP_008942264.1 hypothetical protein -
  Ahae5227_RS15815 (Ahae5227_15985) - 3285083..3285859 (-) 777 WP_008942263.1 uroporphyrinogen-III synthase -
  Ahae5227_RS15820 (Ahae5227_15990) hemC 3285859..3286776 (-) 918 WP_008942262.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=313185 Ahae5227_RS15795 WP_004637627.1 3281863..3282189(-) (hns) [Acinetobacter haemolyticus strain 5227]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=313185 Ahae5227_RS15795 WP_004637627.1 3281863..3282189(-) (hns) [Acinetobacter haemolyticus strain 5227]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTACCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment