Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Ahae5227_RS15255 Genome accession   NZ_CP031988
Coordinates   3159481..3161706 (+) Length   741 a.a.
NCBI ID   WP_017396558.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 5227     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3154481..3166706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS15235 (Ahae5227_15395) lnt 3155242..3156801 (+) 1560 WP_004637736.1 apolipoprotein N-acyltransferase -
  Ahae5227_RS15240 (Ahae5227_15400) - 3156890..3157234 (-) 345 WP_004637735.1 hypothetical protein -
  Ahae5227_RS15245 (Ahae5227_15405) gspG 3157498..3158127 (-) 630 WP_004637734.1 type II secretion system major pseudopilin GspG -
  Ahae5227_RS15250 (Ahae5227_15410) gspF 3158127..3159332 (-) 1206 WP_004637733.1 type II secretion system inner membrane protein GspF -
  Ahae5227_RS15255 (Ahae5227_15415) priA 3159481..3161706 (+) 2226 WP_017396558.1 primosomal protein N' Machinery gene
  Ahae5227_RS15260 (Ahae5227_15420) - 3161747..3163564 (+) 1818 WP_004637731.1 cation:proton antiporter -
  Ahae5227_RS15265 (Ahae5227_15425) - 3163673..3164545 (+) 873 WP_017396559.1 Hsp33 family molecular chaperone HslO -
  Ahae5227_RS15270 (Ahae5227_15430) - 3164655..3165005 (-) 351 WP_004637729.1 hypothetical protein -
  Ahae5227_RS15275 (Ahae5227_15435) - 3165169..3166128 (+) 960 WP_004637728.1 DnaJ C-terminal domain-containing protein -
  Ahae5227_RS15280 (Ahae5227_15440) - 3166140..3166466 (+) 327 WP_160124049.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84361.41 Da        Isoelectric Point: 8.6574

>NTDB_id=313182 Ahae5227_RS15255 WP_017396558.1 3159481..3161706(+) (priA) [Acinetobacter haemolyticus strain 5227]
MPSENSNAILYRIRVALPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNQVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSPKQYEAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLIRVESKDREYSQHFLTDIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=313182 Ahae5227_RS15255 WP_017396558.1 3159481..3161706(+) (priA) [Acinetobacter haemolyticus strain 5227]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCCTACCCGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTGTCGTTCGGACGACAAAATCTCGTAG
GTATCATTGTTGAAAAAATTGATCCTAATCAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCTCAGTATTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTCCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCTGTGGAAAATCGTGCCAA
ATGATGATCCGAATGCATTATTGAAACGCTCTCCAAAACAATATGAGGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACCACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAGTG
TTGTCTGGAACCACATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTCACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCAGAAATCGGCCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGGTTTCATTGTGATATTGCTTTATTACACTCAGGGTTAAATGACTCGAAGC
GCTTACAAGCATGGCAACACGCGCAAACAGGTAAAGCTTCGATTGTGATCGGGACTCGTTCTGCGATCTACACGCCGCTT
CCTCATCTCGGACTGATTATCCTCGATGAAGAGCATGATCTTTCTTATAAACAGCAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCGCTCTACAGAGGATACTTACAACACTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGCGTCGCTGTCCTGCCTAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACTTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGTTATGCACCGATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCATTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCTGATCATTGCCCAGCATGCCAAAAACAAAGTTTAAAAACGATTGGCGCTGGAACGGCAAAGCTTGAAGAACA
TTTACAAGAGTTATTTCCTCACAATGAAGTGATTCGAGTTGATCGTGACAGTACCAGCCGTGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGACATCATTTCCCACAT
GTAACTTTGGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACTGCACAATT
AATAGTACAAGTGGCTGGACGTGCTGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGACCATC
CAATGCTCACCACATTAATTGAACATGACTATCGTACGGTAGCCAAACAAATGCTGGCTGAGCGCAAACTTGCAATGCTC
CCTCCTTATCGTTATACGGTATTGATACGTGTTGAATCGAAAGATCGAGAGTATAGCCAGCATTTCTTGACGGATATTGC
ACAACAACTCAGAACAATGGCTGGTGATTTAGTTGATATTTGGGGACCAATTCCTGCACCGATGGAACGTAAAGCTGGAC
GCTATCGTGCCCATATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.449

99.19

0.818

Multiple sequence alignment