Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AhaeAN3_RS13945 Genome accession   NZ_CP031984
Coordinates   2939749..2940075 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2934749..2945075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS13925 (AhaeAN3_13985) - 2935056..2935664 (-) 609 WP_125503094.1 FHA domain-containing protein -
  AhaeAN3_RS13930 (AhaeAN3_13990) gspD 2935743..2937953 (-) 2211 WP_005087946.1 type II secretion system secretin GspD -
  AhaeAN3_RS13935 (AhaeAN3_13995) - 2937995..2938831 (-) 837 WP_160127341.1 type II secretion system protein N -
  AhaeAN3_RS13940 (AhaeAN3_14000) gspN 2938831..2939574 (-) 744 WP_026056326.1 type II secretion system protein N -
  AhaeAN3_RS13945 (AhaeAN3_14005) hns 2939749..2940075 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  AhaeAN3_RS13950 (AhaeAN3_14010) - 2940505..2940936 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  AhaeAN3_RS13955 (AhaeAN3_14015) - 2940945..2942138 (-) 1194 WP_005087942.1 hypothetical protein -
  AhaeAN3_RS13960 (AhaeAN3_14020) - 2942144..2942968 (-) 825 WP_160127342.1 hypothetical protein -
  AhaeAN3_RS13965 (AhaeAN3_14025) - 2942965..2943741 (-) 777 WP_160127343.1 uroporphyrinogen-III synthase -
  AhaeAN3_RS13970 (AhaeAN3_14030) hemC 2943741..2944658 (-) 918 WP_005087936.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=313146 AhaeAN3_RS13945 WP_004637627.1 2939749..2940075(-) (hns) [Acinetobacter haemolyticus strain AN3]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=313146 AhaeAN3_RS13945 WP_004637627.1 2939749..2940075(-) (hns) [Acinetobacter haemolyticus strain AN3]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment