Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AhaeAN3_RS08155 Genome accession   NZ_CP031984
Coordinates   1699929..1700273 (-) Length   114 a.a.
NCBI ID   WP_267313289.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694929..1705273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS08125 (AhaeAN3_08185) tadA 1695070..1695582 (-) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -
  AhaeAN3_RS08130 (AhaeAN3_08190) - 1695587..1696711 (-) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  AhaeAN3_RS08135 (AhaeAN3_08195) ung 1696708..1697421 (-) 714 WP_005090364.1 uracil-DNA glycosylase -
  AhaeAN3_RS08140 (AhaeAN3_08200) - 1697468..1698064 (-) 597 WP_017394547.1 6-pyruvoyl trahydropterin synthase family protein -
  AhaeAN3_RS08145 (AhaeAN3_08205) gspK 1698150..1699127 (-) 978 WP_004639300.1 type II secretion system minor pseudopilin GspK -
  AhaeAN3_RS08150 (AhaeAN3_08210) xcpW 1699129..1699923 (-) 795 WP_160127119.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AhaeAN3_RS08155 (AhaeAN3_08215) xcpV 1699929..1700273 (-) 345 WP_267313289.1 type II secretion system protein Machinery gene
  AhaeAN3_RS08160 (AhaeAN3_08220) - 1700536..1701036 (-) 501 WP_236764258.1 type II secretion system protein GspH -
  AhaeAN3_RS08165 (AhaeAN3_08225) - 1701222..1701827 (-) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  AhaeAN3_RS08170 (AhaeAN3_08230) - 1701869..1702642 (-) 774 WP_005080456.1 TatD family hydrolase -
  AhaeAN3_RS08175 (AhaeAN3_08235) - 1702663..1703007 (-) 345 WP_100833619.1 PilZ domain-containing protein -
  AhaeAN3_RS08180 (AhaeAN3_08240) - 1703331..1703639 (-) 309 WP_004639308.1 hypothetical protein -
  AhaeAN3_RS08185 (AhaeAN3_08245) - 1703783..1704766 (-) 984 WP_160127122.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12669.59 Da        Isoelectric Point: 6.4643

>NTDB_id=313135 AhaeAN3_RS08155 WP_267313289.1 1699929..1700273(-) (xcpV) [Acinetobacter haemolyticus strain AN3]
MVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLDGTQSKQITSQGETWQIDKKAQATISPK
VQRIELQVSLFNVDQEKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 345 bp        

>NTDB_id=313135 AhaeAN3_RS08155 WP_267313289.1 1699929..1700273(-) (xcpV) [Acinetobacter haemolyticus strain AN3]
ATGGTGGCTTTGGCAATTTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAAA
TGCAATTTTACGTACTAAGGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGATG
GAACCCAATCCAAACAAATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAAA
GTTCAGCGGATCGAATTACAAGTGAGTCTATTTAACGTTGATCAAGAGAAAGTTGAAGCGGGTGTTGGTCATCTAGTGTT
TTTCAATCATCAGACTGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

80

96.491

0.772

Multiple sequence alignment