Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   AhaeAN4_RS01580 Genome accession   NZ_CP031979
Coordinates   339390..340337 (+) Length   315 a.a.
NCBI ID   WP_008941160.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 335640..342277 339390..340337 within 0


Gene organization within MGE regions


Location: 335640..342277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN4_RS01565 (AhaeAN4_01595) - 336839..337429 (+) 591 WP_160132021.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AhaeAN4_RS01570 (AhaeAN4_01600) - 337517..338649 (+) 1133 WP_227554019.1 IS3 family transposase -
  AhaeAN4_RS01575 (AhaeAN4_01605) pilV 338717..339205 (+) 489 WP_004641261.1 type IV pilus modification protein PilV Machinery gene
  AhaeAN4_RS01580 (AhaeAN4_01610) comB 339390..340337 (+) 948 WP_008941160.1 PilW family protein Machinery gene
  AhaeAN4_RS01585 (AhaeAN4_01615) pilX 340340..341074 (+) 735 WP_004641259.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34020.49 Da        Isoelectric Point: 7.6132

>NTDB_id=313077 AhaeAN4_RS01580 WP_008941160.1 339390..340337(+) (comB) [Acinetobacter haemolyticus strain AN4]
MVSLALGLIIVAAATQLFITGLTSYKLQKAMAHIQDSASFGLNFIVDDIRKANLSSPMPAVNDQIAYSGIILTSKNVGSK
INLNCTACFSDNKLTSFGNANVTGLANDQLLIRYRSPQDGFDCSGNTTTTNTFVVQRYFVGSTSTDLRQSLRCQAAQYTQ
AQLDAATEANPLLLSWSASQVILPNVDFFQVRLGYIDGELESANSSLAYTDIKNYMALSAKTKNIDGVVQTVRPHVHAVQ
IGVLVQSADSAGHQSIIKDRNKQPFQVLGTQVTLTPTYQDTRLRQVVDQTISLRNAMGWVTEGCDSSKTTCTGGA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=313077 AhaeAN4_RS01580 WP_008941160.1 339390..340337(+) (comB) [Acinetobacter haemolyticus strain AN4]
ATGGTCTCTTTGGCTCTAGGCTTAATTATTGTCGCTGCAGCAACACAATTATTTATTACTGGCCTGACCAGTTATAAGCT
ACAAAAGGCGATGGCACATATTCAGGATAGCGCAAGTTTCGGATTAAACTTCATCGTTGATGATATTCGTAAAGCAAATT
TGAGCTCGCCGATGCCAGCGGTCAATGATCAAATTGCTTATTCAGGAATCATTCTAACCTCAAAGAATGTTGGATCAAAA
ATTAATTTAAATTGCACGGCATGCTTTTCTGATAACAAATTAACCAGCTTTGGAAATGCCAATGTTACAGGTCTAGCTAA
TGATCAGTTGTTAATTCGTTATCGATCTCCACAAGATGGTTTCGATTGTTCTGGAAATACTACAACAACTAATACATTTG
TTGTTCAGCGTTATTTTGTTGGTTCAACATCAACTGATTTACGTCAATCTCTGCGTTGTCAAGCTGCTCAATATACACAA
GCACAATTAGATGCTGCCACTGAAGCAAATCCTCTGCTATTAAGTTGGTCAGCAAGTCAGGTGATTTTACCAAATGTAGA
CTTTTTTCAAGTTCGTCTAGGTTATATCGATGGTGAGCTTGAGAGCGCAAATAGCTCACTTGCTTATACTGATATAAAAA
ATTATATGGCTTTGAGTGCTAAAACCAAGAATATAGATGGCGTTGTTCAAACTGTACGCCCACATGTGCATGCTGTTCAA
ATAGGTGTATTGGTCCAATCTGCCGATTCTGCGGGGCATCAATCTATTATCAAAGATCGGAATAAACAGCCATTTCAGGT
ACTTGGTACTCAGGTAACGTTAACACCAACCTATCAAGATACTCGATTACGTCAGGTTGTAGATCAAACAATATCACTTC
GTAATGCAATGGGTTGGGTAACTGAAGGGTGTGATAGCAGTAAAACGACTTGTACGGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(137-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

49.521

99.365

0.492

Multiple sequence alignment