Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AhaeAN43_RS15035 Genome accession   NZ_CP031976
Coordinates   3171017..3171343 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN43     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3171777..3172646 3171017..3171343 flank 434


Gene organization within MGE regions


Location: 3171017..3172646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN43_RS15035 (AhaeAN43_15185) hns 3171017..3171343 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  AhaeAN43_RS15040 (AhaeAN43_15190) - 3171577..3171657 (-) 81 Protein_2945 IS1 family transposase -
  AhaeAN43_RS15045 (AhaeAN43_15195) - 3171714..3172646 (+) 933 WP_035374992.1 IS5-like element ISAba12 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=313061 AhaeAN43_RS15035 WP_004637627.1 3171017..3171343(-) (hns) [Acinetobacter haemolyticus strain AN43]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=313061 AhaeAN43_RS15035 WP_004637627.1 3171017..3171343(-) (hns) [Acinetobacter haemolyticus strain AN43]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment