Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D1345_RS13625 Genome accession   NZ_CP031968
Coordinates   3015492..3016853 (-) Length   453 a.a.
NCBI ID   WP_019104010.1    Uniprot ID   A0AAD0RSE5
Organism   Chromobacterium rhizoryzae strain JP2-74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3010492..3021853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1345_RS13605 (D1345_13605) - 3011012..3013552 (-) 2541 WP_019100425.1 TonB-dependent receptor -
  D1345_RS13610 (D1345_13610) - 3014256..3014612 (+) 357 WP_043590020.1 DUF2325 domain-containing protein -
  D1345_RS13615 (D1345_13615) - 3014733..3014912 (-) 180 WP_019104008.1 zf-HC2 domain-containing protein -
  D1345_RS13620 (D1345_13620) - 3014909..3015469 (-) 561 WP_043590021.1 sigma-70 family RNA polymerase sigma factor -
  D1345_RS13625 (D1345_13625) radA 3015492..3016853 (-) 1362 WP_019104010.1 DNA repair protein RadA Machinery gene
  D1345_RS13630 (D1345_13630) - 3016881..3017444 (-) 564 WP_039756482.1 hypothetical protein -
  D1345_RS13635 (D1345_13635) - 3017461..3018216 (-) 756 WP_043590022.1 SDR family oxidoreductase -
  D1345_RS13640 (D1345_13640) hpnE 3018276..3019544 (-) 1269 WP_043590046.1 hydroxysqualene dehydroxylase HpnE -
  D1345_RS13645 (D1345_13645) hpnD 3019552..3020397 (-) 846 WP_039756485.1 presqualene diphosphate synthase HpnD -
  D1345_RS13650 (D1345_13650) hpnC 3020619..3021431 (-) 813 WP_019100818.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49074.46 Da        Isoelectric Point: 7.1029

>NTDB_id=312962 D1345_RS13625 WP_019104010.1 3015492..3016853(-) (radA) [Chromobacterium rhizoryzae strain JP2-74]
MAKIKTVFSCAECGGQTPKWQGQCPHCNAWNTLTEAVQAAPVANARFQSWSDSATQVQKLSDVQTEEVPRDPSGIDELDR
VLGGGVVRGAVILIGGDPGIGKSTLLLQALSEIGARRKVLYVSGEESPQQIALRATRLAVATERVNLLAEIRLETILETL
KRERPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQTGITILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFVMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGSRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNRALPEKLVVFGEVGLAGEV
RPVARGQERLKEAAKLGFTRAIVPQANRPRQPIEGLHVIAVERLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=312962 D1345_RS13625 WP_019104010.1 3015492..3016853(-) (radA) [Chromobacterium rhizoryzae strain JP2-74]
ATGGCAAAAATCAAAACCGTTTTCAGTTGTGCCGAGTGCGGCGGTCAAACGCCCAAATGGCAGGGCCAGTGCCCGCATTG
CAACGCCTGGAACACCTTGACCGAGGCGGTGCAGGCCGCGCCGGTGGCCAACGCCCGTTTCCAGTCCTGGAGCGACAGCG
CCACTCAAGTGCAGAAGCTGTCCGATGTGCAAACCGAGGAAGTGCCGCGGGACCCGTCCGGCATCGACGAACTGGACCGG
GTGCTGGGCGGCGGCGTGGTGCGGGGCGCGGTGATTTTGATCGGTGGCGATCCCGGCATCGGCAAATCCACGCTATTGCT
GCAGGCGCTGTCCGAGATTGGCGCGCGCCGCAAGGTGCTCTACGTGTCCGGAGAGGAATCGCCGCAGCAGATCGCGCTGC
GCGCGACCCGGCTGGCGGTGGCCACCGAGCGCGTTAACCTGCTGGCGGAAATCCGGCTGGAAACCATCCTGGAAACACTG
AAGCGCGAGCGGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCCTGTATACCGACCAAGTGACGTCGGCGCCGGGTTC
GGTGTCCCAGGTGCGCGAATGCGCGGCGCAACTGACGCGGATGGCCAAGCAGACCGGCATCACCATTTTGCTGGTGGGAC
ACGTCACCAAGGAAGGTTCGCTGGCCGGCCCGCGCGTGCTGGAGCATATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
TCCCACTCCAATTACCGGATGATACGCGCGATCAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGCGTGTTCGTGATGAC
GGACCGCGGCCTCAAGGGCGTGTCCAACCCCTCCGCCATCTTTCTGTCTTCCTACCGGGACGACGTGGCCGGCTCCTGCG
TGCTGGTCACCCAGGAGGGCAGCCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGATTGTCACGGCTTCCAGCCC
AAGCGCCTGACCGTGGGTCTGGAACAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCGTCGCCTG
CTTCGACCAGGATGTGTTCCTCAACGCGGTGGGCGGGGTCAAGATCAACGAGCCGGCGGCCGACTTGGCTATCATCCTGG
CCATGGTGTCCTCCTTGCGCAACCGGGCGTTGCCGGAAAAGCTGGTGGTGTTCGGCGAAGTGGGCCTGGCGGGCGAGGTG
CGCCCGGTGGCGCGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCTCGGATTCACCCGCGCCATCGTGCCGCAGGCCAA
CCGCCCGCGCCAGCCGATTGAGGGGTTGCACGTGATTGCGGTGGAGCGGCTGGATCAGGCGGTGGAGTTCTGCCGCGAGT
GA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-447)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.499
  radA Streptococcus mitis NCTC 12261

48.706

93.819

0.457
  radA Streptococcus mitis SK321

48.706

93.819

0.457
  radA Streptococcus pneumoniae Rx1

48.706

93.819

0.457
  radA Streptococcus pneumoniae D39

48.706

93.819

0.457
  radA Streptococcus pneumoniae R6

48.706

93.819

0.457
  radA Streptococcus pneumoniae TIGR4

48.706

93.819

0.457

Multiple sequence alignment