Detailed information NTG0312952

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: D1345_RS01860
• Genome accession: NZ_CP031968
• Coordinates: 413480..414625 (-)
• Length: 381 a.a.
• NCBI ID: WP_118266446.1
• Uniprot ID: -
• Organism: Chromobacterium rhizoryzae strain JP2-74
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 408480..419625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1345_RS01840 (D1345_01840)	-	408955..410739 (+)	1785	WP_118266443.1	O-antigen ligase family protein	-
D1345_RS01845 (D1345_01845)	rpoH	410812..411675 (-)	864	WP_019102027.1	RNA polymerase sigma factor RpoH	-
D1345_RS01850 (D1345_01850)	ftsX	411861..412769 (-)	909	WP_019102028.1	permease-like cell division protein FtsX	-
D1345_RS01855 (D1345_01855)	ftsE	412766..413419 (-)	654	WP_043592279.1	cell division ATP-binding protein FtsE	-
D1345_RS01860 (D1345_01860)	pilA	413480..414625 (-)	1146	WP_118266446.1	signal recognition particle-docking protein FtsY	Machinery gene
D1345_RS01865 (D1345_01865)	rsmD	414863..415420 (+)	558	WP_081574309.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
D1345_RS01870 (D1345_01870)	-	415524..415775 (+)	252	WP_019100314.1	YfhL family 4Fe-4S dicluster ferredoxin	-
D1345_RS01890 (D1345_01890)	tuf	416262..417452 (+)	1191	WP_081574305.1	elongation factor Tu	-
D1345_RS01900 (D1345_01900)	secE	417609..417965 (+)	357	WP_019100014.1	preprotein translocase subunit SecE	-
D1345_RS01905 (D1345_01905)	nusG	417965..418498 (+)	534	WP_043594671.1	transcription termination/antitermination protein NusG	-
D1345_RS01910 (D1345_01910)	rplK	418598..419029 (+)	432	WP_019100246.1	50S ribosomal protein L11	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40686.73 Da
• Isoelectric Point: 6.5182

>NTDB_id=312952 D1345_RS01860 WP_118266446.1 413480..414625(-) (pilA) [Chromobacterium rhizoryzae strain JP2-74]
MFSFFKRKPQSEPTPPTTVQTEPAADAQTIIPPEVAAPAIQQPETRAPEQRHSTAAPAEAAPASTRADTPPEPPQVSLKK
MSWAERLKAGLSKTRDKLGKSLAGLFGGGKIDEELYEELETVLLTADMGVDATQHLLDDVRERVSLKGLKDASELKDALK
GSLSDLISPLEKPLDVSGKKPFVIMMAGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLMAWGERNNVTVI
AQQGGDSAAVCYDAIQAAVARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEIILVLDANIGQNAITQVKT
FDDALGLTGLILSKLDGTAKGGVIAAIAKQRPVPLRFVGVGESIDDLRPFKAKDYIDALFD

Nucleotide

• Length: 1146 bp

>NTDB_id=312952 D1345_RS01860 WP_118266446.1 413480..414625(-) (pilA) [Chromobacterium rhizoryzae strain JP2-74]
ATGTTTAGCTTCTTCAAAAGAAAACCCCAGTCCGAGCCCACGCCCCCGACAACAGTCCAAACGGAGCCTGCGGCCGACGC
TCAAACCATCATTCCGCCCGAAGTGGCCGCCCCTGCCATCCAACAACCGGAAACACGCGCGCCCGAGCAGCGTCACTCCA
CGGCAGCACCCGCCGAAGCCGCCCCAGCCTCGACGCGCGCCGACACGCCGCCCGAGCCCCCTCAGGTTTCTCTGAAAAAA
ATGAGCTGGGCGGAACGCCTGAAAGCCGGCCTGTCAAAAACCCGCGACAAGCTGGGGAAATCCCTGGCTGGTCTGTTTGG
CGGCGGCAAGATCGACGAAGAGTTGTACGAGGAACTGGAAACCGTTCTGCTCACAGCCGACATGGGGGTGGACGCCACAC
AGCACCTGCTCGACGACGTGCGCGAGCGTGTTTCGCTGAAAGGGCTGAAGGATGCTTCTGAACTGAAAGACGCATTGAAA
GGGTCGCTCAGCGATTTGATCTCGCCACTGGAAAAACCGCTGGACGTTAGCGGCAAGAAACCCTTCGTCATCATGATGGC
CGGCGTCAACGGCGCCGGCAAGACTACTTCGATAGGCAAGCTGGCCAAGTACTATCAAAGCCAGGGCAAGAGCGTGCTGC
TGGCTGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAACAGCTGATGGCCTGGGGCGAGCGCAACAACGTCACCGTGATC
GCCCAGCAAGGGGGCGACTCCGCAGCCGTTTGCTACGACGCGATTCAAGCCGCGGTCGCCCGCGGCATCGACATCGTGCT
GGCAGATACCGCGGGCCGCCTGCCCACCCAACTGCACCTCATGGAAGAGATCAAGAAGGTGAAGCGGGTAATCCAAAAGG
CTTTGCCGGACGCGCCGCATGAAATCATCCTGGTTCTGGACGCCAATATCGGCCAGAACGCCATCACTCAGGTCAAGACT
TTTGACGACGCCCTCGGCCTGACCGGGCTAATCTTGAGCAAGCTGGACGGCACCGCCAAGGGCGGCGTAATCGCGGCCAT
CGCCAAGCAACGCCCCGTTCCGCTGCGCTTTGTCGGCGTGGGCGAAAGCATAGACGACCTGCGGCCGTTCAAAGCCAAGG
ACTACATCGACGCGCTGTTCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (181-380)

• SRP54-type protein, helical bundle domain (SRP54_N) (96-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	61.631	100	0.675