Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4U80_RS18610 Genome accession   NZ_CP038357
Coordinates   3597548..3598177 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli O157:H7 strain F7508     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592548..3603177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U80_RS18595 (E4U80_19255) helD 3592790..3594844 (-) 2055 WP_001301436.1 DNA helicase IV -
  E4U80_RS18600 (E4U80_19260) yccF 3594967..3595413 (+) 447 WP_001261230.1 YccF domain-containing protein -
  E4U80_RS18605 (E4U80_19265) yccS 3595423..3597585 (+) 2163 WP_000875023.1 YccS family putative transporter -
  E4U80_RS18610 (E4U80_19270) sxy/tfoX 3597548..3598177 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E4U80_RS18615 (E4U80_19275) sulA 3598396..3598905 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E4U80_RS18620 (E4U80_19280) ompA 3599262..3600302 (+) 1041 WP_000750416.1 porin OmpA -
  E4U80_RS18625 (E4U80_19285) matP 3600378..3600830 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E4U80_RS18630 (E4U80_19290) ycbZ 3601016..3602776 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=312927 E4U80_RS18610 WP_000839159.1 3597548..3598177(-) (sxy/tfoX) [Escherichia coli O157:H7 strain F7508]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=312927 E4U80_RS18610 WP_000839159.1 3597548..3598177(-) (sxy/tfoX) [Escherichia coli O157:H7 strain F7508]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995