Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D1818_RS15720 Genome accession   NZ_CP031963
Coordinates   3778023..3779390 (-) Length   455 a.a.
NCBI ID   WP_118459933.1    Uniprot ID   A0A3A9V7J7
Organism   Aquimarina sp. BL5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3773023..3784390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1818_RS15690 (D1818_15690) - 3773194..3773598 (-) 405 WP_118459927.1 hypothetical protein -
  D1818_RS15695 (D1818_15695) - 3773881..3774405 (+) 525 WP_118459928.1 hypothetical protein -
  D1818_RS15700 (D1818_15700) - 3774437..3775150 (+) 714 WP_118459929.1 DUF434 domain-containing protein -
  D1818_RS15705 (D1818_15705) - 3775365..3775661 (+) 297 WP_233558655.1 hypothetical protein -
  D1818_RS15710 (D1818_15710) - 3776159..3776377 (-) 219 WP_118459931.1 hypothetical protein -
  D1818_RS15715 (D1818_15715) - 3776988..3778019 (+) 1032 WP_118459932.1 aldo/keto reductase -
  D1818_RS15720 (D1818_15720) radA 3778023..3779390 (-) 1368 WP_118459933.1 DNA repair protein RadA Machinery gene
  D1818_RS15725 (D1818_15725) - 3779511..3780659 (-) 1149 WP_118459934.1 alpha/beta hydrolase -
  D1818_RS15730 (D1818_15730) - 3780769..3781746 (-) 978 WP_255424766.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  D1818_RS15735 (D1818_15735) panD 3781751..3782101 (-) 351 WP_118459936.1 aspartate 1-decarboxylase -
  D1818_RS15740 (D1818_15740) panC 3782121..3782969 (-) 849 WP_118459937.1 pantoate--beta-alanine ligase -
  D1818_RS15745 (D1818_15745) - 3783078..3783887 (+) 810 WP_118459938.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50317.75 Da        Isoelectric Point: 6.7477

>NTDB_id=312909 D1818_RS15720 WP_118459933.1 3778023..3779390(-) (radA) [Aquimarina sp. BL5]
MAKTKTVFFCQNCGSQYAKWQGQCTSCKEWNTIAEEVVQKAEKNDWKAPNTSSKERRVSKPLKISEIDTSHEARYNTDDA
ELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERIHSKTDNCLILTETKTQNIFR
QIETTEPDIVIIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQFE
GDRNHVYRILRALKNRFGSTSELGIYEMLGSGLREVSNPSEILISKKEEELSGTVIAATVEGMRPLMIEIQALVSTAVYG
TPQRSATGYNLKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPIAKDYCFAAEVGLAG
EIRPINKVEQRIQEAEKLGFSTIFVSKYNKISRKNTQINIQLVAKIEDVVEYLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=312909 D1818_RS15720 WP_118459933.1 3778023..3779390(-) (radA) [Aquimarina sp. BL5]
ATGGCCAAAACCAAAACTGTCTTTTTCTGCCAGAACTGCGGTTCTCAATACGCTAAATGGCAAGGACAATGTACTTCTTG
CAAAGAATGGAATACCATTGCAGAAGAAGTTGTGCAGAAAGCTGAAAAAAATGATTGGAAAGCCCCTAACACATCATCAA
AAGAACGCCGAGTCTCGAAACCTTTAAAAATCTCTGAGATTGACACTAGCCATGAGGCTAGATATAATACAGACGATGCT
GAACTAAACAGGGTTCTTGGTGGGGGATTGGTTCCAGGATCACTTACATTATTAGGAGGAGAGCCAGGAATTGGAAAAAG
TACATTGTTATTACAGATTAGCTTAAAACTACCTTATAAAACCCTATATGTTTCTGGCGAAGAAAGTCAAAAACAAATAA
AAATGCGCGCAGAGCGCATACACTCTAAAACAGACAACTGTCTGATTCTTACTGAAACTAAAACCCAAAATATTTTCAGG
CAAATTGAAACTACAGAACCGGATATTGTTATTATCGACTCCATACAAACCCTACATAGTGATTATATAGAAAGTAGTGC
TGGTAGTATTTCTCAAATAAGAGAATGCACCACAGAGCTCATTAAATTTGCTAAAGAAACAGCAACTCCAGTAATTCTTA
TTGGTCATATCACAAAAGATGGAAATATAGCTGGGCCTAAAATACTAGAGCACATGGTAGACACAGTACTTCAGTTCGAA
GGAGATCGAAACCACGTATATAGAATTCTAAGAGCCTTGAAAAACCGTTTTGGCTCTACATCAGAATTAGGAATTTATGA
AATGTTAGGTAGTGGCCTTAGAGAAGTGAGTAATCCTAGTGAAATTCTAATCTCTAAAAAAGAAGAAGAATTAAGTGGAA
CTGTCATTGCAGCCACCGTAGAAGGTATGCGACCATTGATGATAGAAATACAGGCGCTGGTAAGCACGGCAGTTTATGGT
ACCCCCCAACGAAGTGCTACAGGATACAATCTTAAACGATTAAATATGATCCTTGCTGTACTCGAAAAACGAGCTGGTTT
CAGATTAGGTGCTAAGGATGTATTCCTGAATATTACTGGCGGTATTTCTGTAGATGATCCAGCTATTGATCTTGCCGTTG
TTGCCGCTATATTATCATCTAACGAAGATATCCCAATTGCCAAAGATTATTGTTTTGCCGCAGAAGTTGGACTTGCCGGT
GAAATTAGACCTATAAACAAAGTAGAGCAAAGAATACAAGAAGCCGAAAAATTAGGTTTCTCGACTATTTTTGTGTCTAA
ATACAATAAAATTTCTCGAAAAAACACACAGATCAACATTCAATTAGTTGCCAAAATTGAAGACGTGGTAGAATATCTGT
TTGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Subunit ChlI of Mg-chelatase (ChlI)

(337-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A9V7J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

47.817

100

0.481
  radA Streptococcus mitis SK321

47.817

100

0.481
  radA Streptococcus mitis NCTC 12261

47.817

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.817

100

0.481
  radA Streptococcus pneumoniae D39

47.817

100

0.481
  radA Streptococcus pneumoniae R6

47.817

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50.231

94.945

0.477

Multiple sequence alignment