Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E4U80_RS06035 Genome accession   NZ_CP038357
Coordinates   1219435..1219950 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157:H7 strain F7508     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214435..1224950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U80_RS05990 (E4U80_06150) csrA 1215252..1215437 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E4U80_RS06020 (E4U80_06180) yqaB 1216665..1217231 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E4U80_RS06025 (E4U80_06185) yqaA 1217228..1217656 (+) 429 WP_001287450.1 YqaA family protein -
  E4U80_RS06030 (E4U80_06190) gshA 1217729..1219285 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  E4U80_RS06035 (E4U80_06195) luxS 1219435..1219950 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  E4U80_RS06040 (E4U80_06200) emrB 1220014..1221552 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E4U80_RS06045 (E4U80_06205) emrA 1221569..1222741 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E4U80_RS06050 (E4U80_06210) emrR 1222868..1223398 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E4U80_RS06055 (E4U80_06215) ygaH 1223489..1223824 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  E4U80_RS06060 (E4U80_06220) ygaZ 1223814..1224551 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=312905 E4U80_RS06035 WP_001130215.1 1219435..1219950(+) (luxS) [Escherichia coli O157:H7 strain F7508]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=312905 E4U80_RS06035 WP_001130215.1 1219435..1219950(+) (luxS) [Escherichia coli O157:H7 strain F7508]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725