Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D1B17_RS09690 Genome accession   NZ_CP031933
Coordinates   2095601..2096974 (-) Length   457 a.a.
NCBI ID   WP_120144186.1    Uniprot ID   A0A386PWK2
Organism   Companilactobacillus zhachilii strain HBUAS52074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2090601..2101974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1B17_RS09670 (D1B17_02880) - 2090940..2091352 (-) 413 Protein_1909 Mini-ribonuclease 3 -
  D1B17_RS09675 (D1B17_02875) cysS 2091345..2092754 (-) 1410 WP_120141916.1 cysteine--tRNA ligase -
  D1B17_RS09680 (D1B17_02870) gltX 2092839..2094335 (-) 1497 WP_120141915.1 glutamate--tRNA ligase -
  D1B17_RS09685 (D1B17_02865) - 2094316..2095587 (-) 1272 WP_120141914.1 PIN/TRAM domain-containing protein -
  D1B17_RS09690 (D1B17_02860) radA 2095601..2096974 (-) 1374 WP_120144186.1 DNA repair protein RadA Machinery gene
  D1B17_RS09695 (D1B17_02855) - 2096994..2097536 (-) 543 WP_120141913.1 dUTP diphosphatase -
  D1B17_RS09700 (D1B17_02850) - 2098129..2098434 (+) 306 WP_120141912.1 GNAT family N-acetyltransferase -
  D1B17_RS09705 (D1B17_02845) rpiA 2098435..2099124 (+) 690 WP_120141911.1 ribose-5-phosphate isomerase RpiA -
  D1B17_RS09710 (D1B17_02840) - 2099138..2100481 (+) 1344 WP_120141910.1 C1 family peptidase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49936.22 Da        Isoelectric Point: 6.1942

>NTDB_id=312804 D1B17_RS09690 WP_120144186.1 2095601..2096974(-) (radA) [Companilactobacillus zhachilii strain HBUAS52074]
MAKVKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVEHPEAAKASATPSRRVSDVEAKPMKLNEVSFEKEPRVETDLGE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLAKDGSKVLYVSGEESASQIKMRADRIGVKGDNLYLYPQTDMSYI
RETIDEMHPDYLIIDSVQTMDEPEITSAVGSVSQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLADANGSAVVVSMEGTRPILVEIQSLITPTV
FGNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNTGIPGTDCFVGEVGL
TGEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKDNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=312804 D1B17_RS09690 WP_120144186.1 2095601..2096974(-) (radA) [Companilactobacillus zhachilii strain HBUAS52074]
TTGGCAAAAGTTAAAACGAAATTCGTATGTCAAAATTGTGGCTATGTTTCACCAAAGTATTTAGGACGTTGTCCTAACTG
TGGTGTCTGGAATCAAATGGTTGAAGAAGTTGAACATCCAGAAGCTGCCAAAGCTAGTGCAACTCCCAGTCGTCGAGTTA
GTGACGTTGAAGCAAAGCCTATGAAGTTAAATGAGGTATCTTTTGAGAAGGAGCCTCGAGTTGAAACTGATTTGGGTGAA
TTAAACCGAGTACTTGGTGGCGGTATCGTCCCAGGATCATTGATTTTGATTGGTGGTGATCCTGGTATTGGTAAATCGAC
GTTGTTAACACAAGTATCAGGACAATTGGCCAAAGATGGTAGTAAAGTTTTGTATGTTTCTGGTGAAGAGAGTGCTTCAC
AAATTAAAATGCGTGCCGATCGGATTGGGGTCAAGGGTGACAATTTGTACCTTTATCCCCAAACCGATATGAGTTATATC
CGTGAAACGATTGATGAAATGCACCCAGATTATTTGATTATTGATTCTGTCCAAACAATGGATGAGCCAGAAATTACCTC
AGCTGTCGGTAGTGTTTCACAAATTCGTGAAGTAACAGCCGAGTTAATGAATATTGCTAAACAACAAAATATTACTGTTT
TTGTCGTTGGTCATGTGACCAAAGGTGGGGCCATTGCCGGTCCAAAAATTTTGGAACATATGGTTGATACTGTTCTATAC
TTTGAAGGGGATACTCACCACAGCTATCGAATTTTGCGTTCAGTGAAAAATCGTTTTGGTTCAACTAATGAGATTGGTAT
TTTTGAAATGCGGACAAAGGGCTTAGTTGAAGTTGCTAATCCATCGGAGATCTTTTTGGAAGAACGTTTAGCTGATGCCA
ATGGTTCCGCCGTGGTTGTTTCCATGGAAGGTACGAGACCAATTTTGGTAGAAATCCAATCATTAATCACACCAACAGTT
TTTGGGAATGCCAAAAGAACTGCCACAGGTTTAGATCACAACCGCGTTTCTGTGATCATGGCAGTGTTGGAAAAACGTGG
CAACTTGATGCTTCAAAATCAAGATGCCTACTTAAAGTCGACTGGTGGTGTAAAGTTGGATGAGCCAGCTATTGATTTAG
CTTTGGCCATGTCAATCGCATCAAGTTATAAAAATACTGGGATTCCTGGAACAGATTGTTTCGTTGGTGAAGTTGGTTTG
ACAGGTGAAGTTCGTCGCGTTAACCGCATTGATCAGCGTGTCAATGAAGCCGAAAAACTAGGCTTTAAGCGTATTTTCAT
TCCCAAGAATAATCTCGGTGATTGGTCGAAAGACAATAAAATTCAAATAATCGGTGTTAGTACAGTATCAGATGCAATGA
ACAAAATTTTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A386PWK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

64.77

100

0.648
  radA Streptococcus mitis NCTC 12261

64.77

100

0.648
  radA Streptococcus pneumoniae Rx1

64.77

100

0.648
  radA Streptococcus mitis SK321

64.77

100

0.648
  radA Streptococcus pneumoniae R6

64.77

100

0.648
  radA Streptococcus pneumoniae TIGR4

64.77

100

0.648
  radA Bacillus subtilis subsp. subtilis str. 168

63.797

99.125

0.632

Multiple sequence alignment