Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LL223_RS09425 Genome accession   NZ_CP031926
Coordinates   1845048..1846853 (-) Length   601 a.a.
NCBI ID   WP_105197255.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 223     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840048..1851853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL223_RS09410 (LL223_1803) alaS 1840397..1843015 (-) 2619 WP_003130876.1 alanine--tRNA ligase -
  LL223_RS09415 (LL223_1804) - 1843281..1844207 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LL223_RS09420 (LL223_1805) - 1844356..1845045 (-) 690 WP_205288533.1 O-methyltransferase -
  LL223_RS09425 (LL223_1806) pepF 1845048..1846853 (-) 1806 WP_105197255.1 oligoendopeptidase F Regulator
  LL223_RS09430 (LL223_1807) coiA 1846916..1847905 (-) 990 WP_010906110.1 competence protein CoiA Machinery gene
  LL223_RS09435 (LL223_1808) - 1847979..1849064 (-) 1086 WP_003130405.1 YdcF family protein -
  LL223_RS09440 (LL223_1809) - 1849226..1850074 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  LL223_RS09445 (LL223_1810) - 1850266..1851687 (-) 1422 WP_003130403.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69911.88 Da        Isoelectric Point: 5.0564

>NTDB_id=312760 LL223_RS09425 WP_105197255.1 1845048..1846853(-) (pepF) [Lactococcus lactis subsp. lactis strain 223]
MAKNRNEITEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLTITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELQKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLKAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAVKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSTEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=312760 LL223_RS09425 WP_105197255.1 1845048..1846853(-) (pepF) [Lactococcus lactis subsp. lactis strain 223]
ATGGCTAAGAATAGAAATGAAATTACTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGTTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCTATGAAAAAT
GATCAAGATACCAGAGAGGCTAAATATCAGGAGTATCAATCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTGAAAATTTCAAAAGAAGTTTATAACAAATGGTTGGGGGAGCTTCAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCGCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATTCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGGAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAAAGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGTGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGTCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAACTGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCTGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.06

100

0.641

Multiple sequence alignment