Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E4U69_RS09565 Genome accession   NZ_CP038351
Coordinates   1967248..1968672 (-) Length   474 a.a.
NCBI ID   WP_000132546.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain F8798     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1962248..1973672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U69_RS09535 (E4U69_09755) yeeZ 1962303..1963127 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E4U69_RS09540 (E4U69_09760) yeeY 1963173..1964102 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  E4U69_RS09545 (E4U69_09765) yoeI 1964317..1964379 (+) 63 WP_010723108.1 membrane protein YoeI -
  E4U69_RS09550 (E4U69_09770) plaP 1964369..1965727 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E4U69_RS09555 (E4U69_09775) tsuA 1965906..1966964 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  E4U69_RS09560 (E4U69_09780) tsuB 1966978..1967205 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E4U69_RS09565 (E4U69_09785) sbcB 1967248..1968672 (-) 1425 WP_000132546.1 exodeoxyribonuclease I Machinery gene
  E4U69_RS09570 (E4U69_09790) - 1968854..1970032 (+) 1179 WP_001007947.1 site-specific integrase -
  E4U69_RS09575 (E4U69_09795) - 1970013..1970204 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  E4U69_RS09580 (E4U69_09800) - 1970286..1970630 (-) 345 WP_001281188.1 hypothetical protein -
  E4U69_RS09585 (E4U69_09805) - 1970657..1970824 (-) 168 WP_000669868.1 hypothetical protein -
  E4U69_RS09590 (E4U69_09810) - 1970867..1971499 (-) 633 WP_000203820.1 phage antirepressor Ant -
  E4U69_RS09595 (E4U69_09815) - 1971823..1972551 (-) 729 WP_000795072.1 hypothetical protein -
  E4U69_RS09600 (E4U69_09825) - 1972647..1973012 (-) 366 WP_000610378.1 DUF551 domain-containing protein -
  E4U69_RS09605 - 1973009..1973365 (-) 357 Protein_1897 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54397.63 Da        Isoelectric Point: 5.2440

>NTDB_id=312679 E4U69_RS09565 WP_000132546.1 1967248..1968672(-) (sbcB) [Escherichia coli O157:H7 strain F8798]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=312679 E4U69_RS09565 WP_000132546.1 1967248..1968672(-) (sbcB) [Escherichia coli O157:H7 strain F8798]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGATAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584