Detailed information NTG0312667

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4U69_RS05490
• Genome accession: NZ_CP038351
• Coordinates: 1131260..1132252 (+)
• Length: 330 a.a.
• NCBI ID: WP_064551555.1
• Uniprot ID: -
• Organism: Escherichia coli O157:H7 strain F8798
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1126260..1137252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4U69_RS05460 (E4U69_05610)	ispD	1126321..1127031 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E4U69_RS05465 (E4U69_05615)	ispF	1127031..1127510 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4U69_RS05470 (E4U69_05620)	truD	1127507..1128556 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
E4U69_RS05475 (E4U69_05625)	surE	1128537..1129298 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4U69_RS05480 (E4U69_05630)	pcm	1129292..1129918 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E4U69_RS05485 (E4U69_05635)	nlpD	1130103..1131197 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
E4U69_RS05490 (E4U69_05640)	rpoS	1131260..1132252 (+)	993	WP_064551555.1	RNA polymerase sigma factor RpoS	Regulator
E4U69_RS05495 (E4U69_05645)	-	1132372..1132779 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
E4U69_RS05500 (E4U69_05650)	-	1132926..1133518 (+)	593	Protein_1094	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E4U69_RS05505 (E4U69_05655)	-	1133518..1134945 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E4U69_RS05510 (E4U69_05660)	-	1134956..1135192 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E4U69_RS05515 (E4U69_05665)	pphB	1135233..1135889 (-)	657	WP_001141351.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38102.01 Da
• Isoelectric Point: 4.5597

>NTDB_id=312667 E4U69_RS05490 WP_064551555.1 1131260..1132252(+) (rpoS) [Escherichia coli O157:H7 strain F8798]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLWLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=312667 E4U69_RS05490 WP_064551555.1 1131260..1132252(+) (rpoS) [Escherichia coli O157:H7 strain F8798]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGTGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712