Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECB_RS14830 Genome accession   NC_012967
Coordinates   3007365..3007841 (+) Length   158 a.a.
NCBI ID   WP_001347688.1    Uniprot ID   -
Organism   Escherichia coli B str. REL606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3002365..3012841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB_RS14805 (ECB_02801) - 3002531..3005047 (+) 2517 WP_015833304.1 hypothetical protein -
  ECB_RS14810 (ECB_02802) - 3005124..3005579 (+) 456 WP_000581493.1 IrmA family protein -
  ECB_RS14815 - 3005658..3005891 (+) 234 WP_001119719.1 DUF905 family protein -
  ECB_RS14820 (ECB_02803) - 3005991..3006809 (+) 819 WP_001234644.1 DUF932 domain-containing protein -
  ECB_RS14825 - 3006864..3007349 (+) 486 WP_000849578.1 antirestriction protein -
  ECB_RS14830 (ECB_02805) radC 3007365..3007841 (+) 477 WP_001347688.1 RadC family protein Machinery gene
  ECB_RS14835 (ECB_02806) - 3007904..3008125 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  ECB_RS14840 - 3008144..3008787 (+) 644 Protein_2876 antitoxin of toxin-antitoxin stability system -
  ECB_RS14845 - 3008837..3009205 (+) 369 WP_001320394.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECB_RS14850 (ECB_02808) - 3009295..3009669 (+) 375 WP_001094454.1 TA system toxin CbtA family protein -
  ECB_RS14855 (ECB_02809) - 3009666..3010154 (+) 489 WP_000777545.1 DUF5983 family protein -
  ECB_RS14860 (ECB_02810) - 3010166..3010363 (+) 198 WP_000839276.1 DUF957 domain-containing protein -
  ECB_RS14865 (ECB_02811) - 3010460..3011029 (+) 570 WP_001290250.1 DUF4942 domain-containing protein -
  ECB_RS14870 - 3011372..3011542 (+) 171 Protein_2882 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17615.28 Da        Isoelectric Point: 7.6151

>NTDB_id=31265 ECB_RS14830 WP_001347688.1 3007365..3007841(+) (radC) [Escherichia coli B str. REL606]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31265 ECB_RS14830 WP_001347688.1 3007365..3007841(+) (radC) [Escherichia coli B str. REL606]
ATGCAACAACTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment