Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C8201_RS15645 Genome accession   NZ_CP031898
Coordinates   3103430..3104059 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O113:H21 strain FWSEC0010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098430..3109059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8201_RS15630 (C8201_16460) helD 3098672..3100726 (-) 2055 WP_001315388.1 DNA helicase IV -
  C8201_RS15635 (C8201_16465) yccF 3100849..3101295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C8201_RS15640 (C8201_16470) yccS 3101305..3103467 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C8201_RS15645 (C8201_16475) sxy/tfoX 3103430..3104059 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C8201_RS15650 (C8201_16480) sulA 3104278..3104787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C8201_RS15655 (C8201_16490) ompA 3105144..3106196 (+) 1053 WP_000750419.1 porin OmpA -
  C8201_RS15660 (C8201_16495) matP 3106271..3106723 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C8201_RS15665 (C8201_16500) ycbZ 3106909..3108669 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=312530 C8201_RS15645 WP_000839153.1 3103430..3104059(-) (sxy/tfoX) [Escherichia coli O113:H21 strain FWSEC0010]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=312530 C8201_RS15645 WP_000839153.1 3103430..3104059(-) (sxy/tfoX) [Escherichia coli O113:H21 strain FWSEC0010]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment