Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E4U63_RS17880 Genome accession   NZ_CP038344
Coordinates   3511676..3512305 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   Q8XD96
Organism   Escherichia coli O157:H7 strain Gim1-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506676..3517305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U63_RS17865 (E4U63_18430) helD 3506918..3508972 (-) 2055 WP_001301436.1 DNA helicase IV -
  E4U63_RS17870 (E4U63_18435) yccF 3509095..3509541 (+) 447 WP_001261230.1 YccF domain-containing protein -
  E4U63_RS17875 (E4U63_18440) yccS 3509551..3511713 (+) 2163 WP_000875023.1 YccS family putative transporter -
  E4U63_RS17880 (E4U63_18445) sxy/tfoX 3511676..3512305 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E4U63_RS17885 (E4U63_18450) sulA 3512524..3513033 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E4U63_RS17890 (E4U63_18455) ompA 3513390..3514430 (+) 1041 WP_000750416.1 porin OmpA -
  E4U63_RS17895 (E4U63_18460) matP 3514506..3514958 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  E4U63_RS17900 (E4U63_18465) ycbZ 3515144..3516904 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=312458 E4U63_RS17880 WP_000839159.1 3511676..3512305(-) (sxy/tfoX) [Escherichia coli O157:H7 strain Gim1-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=312458 E4U63_RS17880 WP_000839159.1 3511676..3512305(-) (sxy/tfoX) [Escherichia coli O157:H7 strain Gim1-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XD96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995