Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | E4U63_RS05470 | Genome accession | NZ_CP038344 |
| Coordinates | 1128185..1129177 (+) | Length | 330 a.a. |
| NCBI ID | WP_000081550.1 | Uniprot ID | A0A370V765 |
| Organism | Escherichia coli O157:H7 strain Gim1-1 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1123185..1134177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4U63_RS05440 (E4U63_05585) | ispD | 1123246..1123956 (+) | 711 | WP_000246158.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| E4U63_RS05445 (E4U63_05590) | ispF | 1123956..1124435 (+) | 480 | WP_001219242.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| E4U63_RS05450 (E4U63_05595) | truD | 1124432..1125481 (+) | 1050 | WP_000568934.1 | tRNA pseudouridine(13) synthase TruD | - |
| E4U63_RS05455 (E4U63_05600) | surE | 1125462..1126223 (+) | 762 | WP_001295182.1 | 5'/3'-nucleotidase SurE | - |
| E4U63_RS05460 (E4U63_05605) | pcm | 1126217..1126843 (+) | 627 | WP_000254708.1 | protein-L-isoaspartate O-methyltransferase | - |
| E4U63_RS05465 (E4U63_05610) | nlpD | 1127028..1128122 (+) | 1095 | WP_306256364.1 | murein hydrolase activator NlpD | - |
| E4U63_RS05470 (E4U63_05615) | rpoS | 1128185..1129177 (+) | 993 | WP_000081550.1 | RNA polymerase sigma factor RpoS | Regulator |
| E4U63_RS05475 (E4U63_05620) | - | 1129297..1129704 (-) | 408 | WP_000175365.1 | MarR family transcriptional regulator | - |
| E4U63_RS05480 (E4U63_05625) | - | 1129851..1130444 (+) | 594 | WP_000767724.1 | non-oxidative hydroxyarylic acid decarboxylases subunit B | - |
| E4U63_RS05485 (E4U63_05630) | - | 1130444..1131871 (+) | 1428 | WP_000863205.1 | non-oxidative hydroxyarylic acid decarboxylases subunit C | - |
| E4U63_RS05490 (E4U63_05635) | - | 1131882..1132118 (+) | 237 | WP_000562982.1 | non-oxidative hydroxyarylic acid decarboxylases subunit D | - |
| E4U63_RS05495 (E4U63_05640) | pphB | 1132159..1132815 (-) | 657 | WP_001141350.1 | protein-serine/threonine phosphatase | - |
Sequence
Protein
Download Length: 330 a.a. Molecular weight: 37972.84 Da Isoelectric Point: 4.5597
>NTDB_id=312432 E4U63_RS05470 WP_000081550.1 1128185..1129177(+) (rpoS) [Escherichia coli O157:H7 strain Gim1-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
Nucleotide
Download Length: 993 bp
>NTDB_id=312432 E4U63_RS05470 WP_000081550.1 1128185..1129177(+) (rpoS) [Escherichia coli O157:H7 strain Gim1-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
73.065 |
97.879 |
0.715 |