Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3163_RS04440 Genome accession   NZ_CP038342
Coordinates   906493..907008 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157:H7 strain H2495     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 901493..912008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3163_RS04415 (E3163_04525) ygaZ 901892..902629 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  E3163_RS04420 (E3163_04530) ygaH 902619..902954 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  E3163_RS04425 (E3163_04535) emrR 903045..903575 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E3163_RS04430 (E3163_04540) emrA 903702..904874 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E3163_RS04435 (E3163_04545) emrB 904891..906429 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  E3163_RS04440 (E3163_04550) luxS 906493..907008 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  E3163_RS04445 (E3163_04555) gshA 907158..908714 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  E3163_RS04450 (E3163_04560) yqaA 908787..909215 (-) 429 WP_001287450.1 YqaA family protein -
  E3163_RS04455 (E3163_04565) yqaB 909212..909778 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E3163_RS04485 (E3163_04595) csrA 911006..911191 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=312350 E3163_RS04440 WP_001130215.1 906493..907008(-) (luxS) [Escherichia coli O157:H7 strain H2495]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=312350 E3163_RS04440 WP_001130215.1 906493..907008(-) (luxS) [Escherichia coli O157:H7 strain H2495]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725